MASCOT Search Results

Search metadata
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Search title : iPRG2008 SwissProt Mouse
MS data file : D:\iPRG2008\mgf\merged.mgf
Databases :

1: cRAP 20090731 (111 sequences; 37,180 residues)

2: SwissProt 57.14 (514,789 sequences; 181,163,771 residues)
Taxonomy :

1: (none)

2: Mus. (16,273 sequences)
Timestamp : 5 Mar 2010 at 14:04:48 GMT
Warning : No taxonomy indexes for cRAP, taxonomy 'Mus.' ignored. Searching all entries in cRAP
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Search parameters
Type of search : MS/MS Ion Search
Enzyme : Trypsin/P
Fixed modifications : iTRAQ4plex (K), iTRAQ4plex (N-term), Methylthio (C)
Variable modifications : Acetyl (Protein N-term), Gln->pyro-Glu (N-term Q), Oxidation (M)
Mass values : Monoisotopic
Protein mass : Unrestricted
Peptide mass tolerance : ± 0.9 Da
Fragment mass tolerance : ± 0.6 Da
Max missed cleavages : 1
Instrument type : ESI-TRAP
Number of queries : 33,191

Score distribution

Peptide score distribution

Peptide score distribution. Ions score is −10log(P), where P is the probability that the observed match is a random event. Individual ions scores > 32 indicate identity or extensive homology (p<0.05).

Protein score distribution for the first 50 proteins

[Deprecated] Score distribution for family members in the first 50 proteins. Protein scores are derived from ions scores as a non-probabilistic basis for ranking protein families.

Legend
Dupes Expect Rank U 1 2 Peptide
0.037 +2 GAYSLSLR significant
9 +1 GFFLFVEGGR top ranking
6.4e-005 +1 GSSIFGLAPGK significant and top ranking
1.3e-006 +1 X SSGTSYPDVLK peptide is found in all proteins in family member 1
6.2e-007 +1 / VCNYVSWIK peptide is found in some but not all proteins in family member 2
6.4e-005 +1 U GSSIFGLAPGK unique
+2 5.7e-005 +1 LNTLETEEWFFK peptide has two duplicates
0.18 +1 LNTLETEEWFFK duplicate peptide

Right-facing triangle (+) in the Dupes or Rank column indicates content that can be expanded by clicking on it. Down-facing triangle (-) indicates the content is expanded and can be collapsed. For more details about particular columns, see results format help.

Protein Family Summary

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Decoy search summary
Peptide matches in target in Decoy FDR
  – above identity threshold 2343 96 4.10%
  – above identity or homology threshold 2851 220 7.72%

Decoy results are available in the decoy report.

Show

Protein families 71–80 (out of 482)

Page: Previous 1 …3 4 5 6 7 8 9 10 11 12 13 … 49 Next 

+71

Accession Score Description
1 2::RL35_MOUSE 231 60S ribosomal protein L35 OS=Mus musculus GN=Rpl35 PE=2 SV=1

+72

Accession Score Description
1 2::HYOU1_MOUSE 229 Hypoxia up-regulated protein 1 OS=Mus musculus GN=Hyou1 PE=1 SV=1

+73

Accession Score Description
1 2::ATPA_MOUSE 225 ATP synthase subunit alpha, mitochondrial OS=Mus musculus GN=Atp5a1 PE=1 SV=1

+74

Accession Score Description
1 2::PPIB_MOUSE 222 Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2

+75

Accession Score Description
1 2::RS11_MOUSE 222 40S ribosomal protein S11 OS=Mus musculus GN=Rps11 PE=2 SV=3

+76

Accession Score Description
Family member distances as a dendrogram 1 2::MUP1_MOUSE 222 Major urinary protein 1 OS=Mus musculus GN=Mup1 PE=1 SV=1
2 2::MUP6_MOUSE 217 Major urinary protein 6 OS=Mus musculus GN=Mup6 PE=1 SV=2
3 2::MUP3_MOUSE 51 Major urinary protein 3 OS=Mus musculus GN=Mup3 PE=1 SV=1

+77

Accession Score Description
1 2::RL34_MOUSE 221 60S ribosomal protein L34 OS=Mus musculus GN=Rpl34 PE=3 SV=2

+78

Accession Score Description
1 2::RS30_MOUSE 221 40S ribosomal protein S30 OS=Mus musculus GN=Fau PE=3 SV=1

+79

Accession Score Description
1 2::RL26_MOUSE 213 60S ribosomal protein L26 OS=Mus musculus GN=Rpl26 PE=2 SV=1

+80

Accession Score Description
1 2::CP4CA_MOUSE 213 Cytochrome P450 4A12A OS=Mus musculus GN=Cyp4a12a PE=2 SV=1
Page: Previous 1 …3 4 5 6 7 8 9 10 11 12 13 … 49 Next 

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