MASCOT Search ResultsMASCOT Search Results| User | : | Jennifer |
|---|---|---|
| : | [email protected] | |
| Search title | : | Andy2683a |
| MS data file | : | Andy2683a.mgf |
| Database | : | P-putida 20180924 (5,556 sequences; 1,892,173 residues) |
| Timestamp | : | 2 Aug 2026 at 00:54:18 GMT |
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| Type of search | : | MS/MS Ion Search |
|---|---|---|
| Enzyme | : | Trypsin |
| Fixed modifications | : | Carbamidomethyl (C) |
| Variable modifications | : | Oxidation (M), Deamidated (NQ) |
| Mass values | : | Monoisotopic |
| Protein mass | : | Unrestricted |
| Peptide mass tolerance | : | ± 50 ppm |
| Fragment mass tolerance | : | ± 0.1 Da |
| Max missed cleavages | : | 1 |
| Instrument type | : | Default |
| Number of queries | : | 4,770 |
Peptide score distribution. Ions score is −10log(P), where P is the probability that the observed match is a random event. Individual ions scores > 20 indicate identity or extensive homology (p<0.05).
[Deprecated] Score distribution for family members in the first 50 proteins. Protein scores are derived from ions scores as a non-probabilistic basis for ranking protein families.
| Dupes | Expect | Rank | U | 1 | 2 | Peptide | |
|---|---|---|---|---|---|---|---|
| 0.037 |  2 |
GAYSLSLR | significant | ||||
| 9 | 1 |
GFFLFVEGGR | top ranking | ||||
| 6.4e-005 | 1 |
GSSIFGLAPGK | significant and top ranking | ||||
| 1.3e-006 | 1 |
 |
SSGTSYPDVLK | peptide is found in all proteins in family member 1 | |||
| 6.2e-007 | 1 |
 |
VCNYVSWIK | peptide is found in some but not all proteins in family member 2 | |||
| 6.4e-005 | 1 |
U | GSSIFGLAPGK | unique | |||
| 2 |
5.7e-005 | 1 |
LNTLETEEWFFK | peptide has two duplicates | |||
| 0.18 | 1 |
LNTLETEEWFFK | duplicate peptide |
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71| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | Q88EP4_PSEPK | 24 | Uncharacterized protein OS=Pseudomonas putida (strain KT2440) GN=PP_4410 PE=4 SV=1 |
72| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | PKS12_MYCTU | 24 | Mycoketide-CoA synthase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=pks12 PE=1 SV=1 |
73| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | Q88DC1_PSEPK | 24 | Uncharacterized protein OS=Pseudomonas putida (strain KT2440) GN=PP_4906 PE=4 SV=1 |
74| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | Q88ET2_PSEPK | 24 | Response regulator FleR OS=Pseudomonas putida (strain KT2440) GN=fleR PE=4 SV=1 |
75| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | Q88LP7_PSEPK | 24 | description |
| Score | Mass | Matches | Sequences | emPAI | |||
|---|---|---|---|---|---|---|---|
| 75.1 | Q88LP7_PSEPK |
24 | 0 | 7 (1) | 7 (1) | 0.02 | |
| description | |||||||
| 3 samesets of Q88LP7_PSEPK | |||||||
| Q88L55_PSEPK |
24 | 187556 | 4 (1) | 4 (1) | 0.02 | ||
| Uncharacterized protein OS=Pseudomonas putida (strain KT2440) GN=PP_2080 PE=4 SV=1 | |||||||
| Q88K55_PSEPK |
24 | 0 | 2 (1) | 2 (1) | 0.10 | ||
| description | |||||||
| TRMD_PSEPK |
24 | 0 | 3 (1) | 1 (1) | 0.12 | ||
| description | |||||||
7 peptide matches (7 non-duplicate, 0 duplicate)| Query | Dupes | Observed | Mr(expt) | Mr(calc) | ppm | M | Score | Expect | Rank | U | Peptide |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 2165 |
531.3045 | 530.2972 | 530.2813 | 30.1 | 0 | 18 | 0.47 | 4Score > 27 indicates identity |
R.DALGR.S | ||
| 2233 |
591.3099 | 590.3026 | 590.3024 | 0.41 | 0 | 24 | 0.034 | 1Score > 21 indicates identity |
U | R.STVQR.R + Deamidated (NQ) | |
| 2585 |
831.4612 | 830.4539 | 830.4498 | 5.00 | 0 | 23 | 0.069 | 4Score > 24 indicates identity |
U | K.DDLLLSR.T | |
| 2624 |
861.3969 | 860.3896 | 860.4141 | -28.4 | 0 | 16 | 0.18 | 7Score > 21 indicates identity |
U | R.GGQPAFQR.T + Deamidated (NQ) | |
| 2636 |
877.3998 | 876.3925 | 876.4301 | -42.9 | 0 | 6 | 1.1 | 3Score > 19 indicates identity |
U | K.TTTPASSGR.G | |
| 2667 |
459.2477 | 916.4808 | 916.4978 | -18.5 | 0 | 5 | 1.1 | 2Score > 24 indicates identity Score > 18 indicates homology |
U | R.TLQVGGVSR.L + Deamidated (NQ) | |
| 2908 |
532.8115 | 1063.6084 | 1063.5695 | 36.6 | 1 | 3 | 3.1 | 4Score > 20 indicates identity |
U | K.TLSELKMAR.Q + Oxidation (M) |
76| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | Q88PE1_PSEPK | 23 | Uncharacterized protein OS=Pseudomonas putida (strain KT2440) GN=PP_0909 PE=4 SV=1 |
77| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | Q88FD9_PSEPK | 23 | Histidine kinase OS=Pseudomonas putida (strain KT2440) GN=kdpD PE=4 SV=1 |
78| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | Q7WTF3_9ACTN | 23 | NanA3 OS=Streptomyces nanchangensis OX=204925 GN=nanA3 PE=4 SV=1 |
79| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | Q88G33_PSEPK | 23 | Phage DNA helicase, putative OS=Pseudomonas putida (strain KT2440) GN=PP_3893 PE=4 SV=1 |
80| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | Q88L71_PSEPK | 23 | Multidrug efflux RND membrane fusion protein OS=Pseudomonas putida (strain KT2440) GN=PP_2064 PE=4 SV=1 |
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