MASCOT Search ResultsMASCOT Search Results| User | : | Jennifer |
|---|---|---|
| : | [email protected] | |
| Search title | : | Andy2683a |
| MS data file | : | Andy2683a.mgf |
| Database | : | P-putida 20180924 (5,556 sequences; 1,892,173 residues) |
| Timestamp | : | 2 Aug 2026 at 00:54:18 GMT |
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| Type of search | : | MS/MS Ion Search |
|---|---|---|
| Enzyme | : | Trypsin |
| Fixed modifications | : | Carbamidomethyl (C) |
| Variable modifications | : | Oxidation (M), Deamidated (NQ) |
| Mass values | : | Monoisotopic |
| Protein mass | : | Unrestricted |
| Peptide mass tolerance | : | ± 50 ppm |
| Fragment mass tolerance | : | ± 0.1 Da |
| Max missed cleavages | : | 1 |
| Instrument type | : | Default |
| Number of queries | : | 4,770 |
Peptide score distribution. Ions score is −10log(P), where P is the probability that the observed match is a random event. Individual ions scores > 20 indicate identity or extensive homology (p<0.05).
[Deprecated] Score distribution for family members in the first 50 proteins. Protein scores are derived from ions scores as a non-probabilistic basis for ranking protein families.
| Dupes | Expect | Rank | U | 1 | 2 | Peptide | |
|---|---|---|---|---|---|---|---|
| 0.037 |  2 |
GAYSLSLR | significant | ||||
| 9 | 1 |
GFFLFVEGGR | top ranking | ||||
| 6.4e-005 | 1 |
GSSIFGLAPGK | significant and top ranking | ||||
| 1.3e-006 | 1 |
 |
SSGTSYPDVLK | peptide is found in all proteins in family member 1 | |||
| 6.2e-007 | 1 |
 |
VCNYVSWIK | peptide is found in some but not all proteins in family member 2 | |||
| 6.4e-005 | 1 |
U | GSSIFGLAPGK | unique | |||
| 2 |
5.7e-005 | 1 |
LNTLETEEWFFK | peptide has two duplicates | |||
| 0.18 | 1 |
LNTLETEEWFFK | duplicate peptide |
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41| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | Q88CD1_PSEPK | 29 | description |
42| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | Q88CY6_PSEPK | 29 | Uncharacterized protein OS=Pseudomonas putida (strain KT2440) GN=PP_5043 PE=4 SV=1 |
43| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | Q88JT4_PSEPK | 28 | Antibiotic biosynthesis protein, putative OS=Pseudomonas putida (strain KT2440) GN=PP_2563 PE=4 SV=1 |
44| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | Q88LY2_PSEPK | 28 | Uncharacterized protein OS=Pseudomonas putida (strain KT2440) GN=PP_1794 PE=4 SV=1 |
45| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | Q88IQ9_PSEPK | 28 | Antitoxin OS=Pseudomonas putida (strain KT2440) GN=PP_2940 PE=3 SV=1 |
46| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | Q88JL1_PSEPK | 28 | Cellulose synthase operon C protein, putative OS=Pseudomonas putida (strain KT2440) GN=PP_2638 PE=4 SV=1 |
| Score | Mass | Matches | Sequences | emPAI | |||
|---|---|---|---|---|---|---|---|
| 46.1 | Q88JL1_PSEPK |
28 | 129595 | 8 (2) | 8 (2) | 0.05 | |
| Cellulose synthase operon C protein, putative OS=Pseudomonas putida (strain KT2440) GN=PP_2638 PE=4 SV=1 | |||||||
8 peptide matches (8 non-duplicate, 0 duplicate)| Query | Dupes | Observed | Mr(expt) | Mr(calc) | ppm | M | Score | Expect | Rank | U | Peptide |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 2165 |
531.3045 | 530.2972 | 530.2813 | 30.1 | 0 | 18 | 0.47 | 4Score > 27 indicates identity |
R.DALGR.L | ||
| 2278 |
617.3265 | 616.3192 | 616.3180 | 1.97 | 0 | 27 | 0.028 | 4Score > 24 indicates identity |
U | R.LQQAR.L + 2 Deamidated (NQ) | |
| 2520 |
386.2287 | 770.4428 | 770.4511 | -10.7 | 1 | 23 | 0.033 | 1Score > 21 indicates identity |
U | R.RLQQAR.L | |
| 2886 |
525.2900 | 1048.5654 | 1048.5301 | 33.7 | 0 | 5 | 2 | 4Score > 21 indicates identity Score > 20 indicates homology |
U | R.QQAQFASLR.R + Deamidated (NQ) | |
| 2983 |
557.7675 | 1113.5204 | 1113.5753 | -49.3 | 0 | 0 | 1 | 2Score > 20 indicates identity Score > 13 indicates homology |
U | R.VGVTLMHWR.H + Oxidation (M) | |
| 3001 |
564.7742 | 1127.5338 | 1127.5319 | 1.71 | 1 | 2 | 4.9 | 10Score > 21 indicates identity |
U | R.DPGARDAAAQR.E + Deamidated (NQ) | |
| 3166 |
632.3596 | 1262.7046 | 1262.6659 | 30.7 | 0 | 1 | 1 | 2Score > 20 indicates identity Score > 13 indicates homology |
U | R.QTLAGWLFAEK.R | |
| 4190 |
822.0967 | 2463.2683 | 2463.1994 | 28.0 | 1 | 2 | 0.74 | 1Score > 22 indicates identity Score > 14 indicates homology |
U | -.MQRMIGVLMLAAITCQADAQPK.D + Oxidation (M); 2 Deamidated (NQ) |
| Score | Mass | Subset of | |||
|---|---|---|---|---|---|
| HUTH_PSEPK |
27 | 54113 | 46.1 | ||
| Histidine ammonia-lyase OS=Pseudomonas putida (strain KT2440) GN=hutH PE=3 SV=1 | |||||
| 7 samesets of HUTH_PSEPK | |||||
| Q88LA7_PSEPK |
27 | 0 | |||
| description | |||||
| Q88N21_PSEPK |
27 | 0 | |||
| description | |||||
| THIC_PSEPK |
27 | 0 | |||
| description | |||||
| Q88CJ4_PSEPK |
27 | 0 | |||
| description | |||||
| Q88H01_PSEPK |
27 | 0 | |||
| description | |||||
| Q88I36_PSEPK |
27 | 0 | |||
| description | |||||
| Q88LD5_PSEPK |
27 | 0 | |||
| description | |||||
47| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | Q88IV6_PSEPK | 28 | Uncharacterized protein OS=Pseudomonas putida (strain KT2440) GN=PP_2893 PE=4 SV=1 |
48| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | DEF1_PSEPK | 28 | Peptide deformylase 1 OS=Pseudomonas putida (strain KT2440) GN=def1 PE=3 SV=1 |
49| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | Q88EE9_PSEPK | 27 | ATP-dependent DNA helicase RecQ OS=Pseudomonas putida (strain KT2440) GN=recQ PE=4 SV=1 |
50| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | Q88QJ6_PSEPK | 27 | L-asparaginase, type I OS=Pseudomonas putida (strain KT2440) GN=ansB PE=4 SV=1 |
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