MASCOT Search ResultsMASCOT Search Results| User | : | Jennifer |
|---|---|---|
| : | [email protected] | |
| Search title | : | Rita6 sp |
| MS data file | : | PRT1270_T-BRSC_6_20250714122635.mgf |
| Database | : | SwissProt 57.15 (515,203 sequences; 181,334,896 residues) |
| Timestamp | : | 12 Aug 2025 at 23:38:56 GMT |
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| Type of search | : | MS/MS Ion Search |
|---|---|---|
| Enzyme | : | GluC_Trypsin |
| Fixed modifications | : | Carbamidomethyl (C) |
| Variable modifications | : | Deamidated (NQ), Oxidation (M) |
| Mass values | : | Monoisotopic |
| Protein mass | : | Unrestricted |
| Peptide mass tolerance | : | ± 20 ppm |
| Fragment mass tolerance | : | ± 0.1 Da |
| Max missed cleavages | : | 1 |
| Instrument type | : | ESI-FTICR |
| Number of queries | : | 4,869 |
Peptide score distribution. Ions score is −10log(P), where P is the probability that the observed match is a random event. Individual ions scores > 39 indicate identity or extensive homology (p<0.05).
[Deprecated] Score distribution for family members in the first 50 proteins. Protein scores are derived from ions scores as a non-probabilistic basis for ranking protein families.
| Dupes | Expect | Rank | U | 1 | 2 | Peptide | |
|---|---|---|---|---|---|---|---|
| 0.037 |  2 |
GAYSLSLR | significant | ||||
| 9 | 1 |
GFFLFVEGGR | top ranking | ||||
| 6.4e-005 | 1 |
GSSIFGLAPGK | significant and top ranking | ||||
| 1.3e-006 | 1 |
 |
SSGTSYPDVLK | peptide is found in all proteins in family member 1 | |||
| 6.2e-007 | 1 |
 |
VCNYVSWIK | peptide is found in some but not all proteins in family member 2 | |||
| 6.4e-005 | 1 |
U | GSSIFGLAPGK | unique | |||
| 2 |
5.7e-005 | 1 |
LNTLETEEWFFK | peptide has two duplicates | |||
| 0.18 | 1 |
LNTLETEEWFFK | duplicate peptide |
Right-facing triangle () in the Dupes or Rank column indicates content that can be expanded by clicking on it. Down-facing triangle (
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1| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | EFTU2_PSEPK | 1352 | Elongation factor Tu-B OS=Pseudomonas putida (strain KT2440) GN=tufB PE=3 SV=1 | |
| 4 | EFTU_CYAP7 | 34 | Elongation factor Tu OS=Cyanothece sp. (strain PCC 7424) GN=tuf PE=3 SV=1 | |
| 3 | EFTU_CARRP | 180 | Elongation factor Tu OS=Carsonella ruddii (strain PV) GN=tuf PE=3 SV=1 | |
| 2 | EFTU1_PSEPK | 1236 | Elongation factor Tu-A OS=Pseudomonas putida (strain KT2440) GN=tufA PE=3 SV=1 | |
2| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ATPB_PSEPG | 1121 | ATP synthase subunit beta OS=Pseudomonas putida (strain GB-1) GN=atpD PE=3 SV=1 | |
| 2 | ATPB_PSEFS | 949 | ATP synthase subunit beta OS=Pseudomonas fluorescens (strain SBW25) GN=atpD PE=3 SV=1 | |
3| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ATPA_PSEPK | 954 | ATP synthase subunit alpha OS=Pseudomonas putida (strain KT2440) GN=atpA PE=3 SV=1 | |
| 2 | ATPA_RICAH | 173 | ATP synthase subunit alpha OS=Rickettsia akari (strain Hartford) GN=atpA PE=3 SV=1 | |
| 3 | ATPA_VEREI | 163 | ATP synthase subunit alpha OS=Verminephrobacter eiseniae (strain EF01-2) GN=atpA PE=3 SV=1 | |
4| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | CH60_PSEPK | 667 | 60 kDa chaperonin OS=Pseudomonas putida (strain KT2440) GN=groL PE=3 SV=1 | |
| 4 | CH602_SORC5 | 69 | 60 kDa chaperonin 2 OS=Sorangium cellulosum (strain So ce56) GN=groL2 PE=3 SV=1 | |
| 3 | CH60_COLMA | 82 | 60 kDa chaperonin OS=Colwellia maris GN=groL PE=3 SV=2 | |
| 2 | CH601_ECOK1 | 119 | 60 kDa chaperonin 1 OS=Escherichia coli O1:K1 / APEC GN=groL1 PE=3 SV=1 | |
5| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RPOC_PSEPK | 451 | DNA-directed RNA polymerase subunit beta' OS=Pseudomonas putida (strain KT2440) GN=rpoC PE=3 SV=1 | |
| 4 | RPOC_PELUB | 108 | DNA-directed RNA polymerase subunit beta' OS=Pelagibacter ubique GN=rpoC PE=3 SV=1 | |
| 3 | RPOC_SYNAS | 149 | DNA-directed RNA polymerase subunit beta' OS=Syntrophus aciditrophicus (strain SB) GN=rpoC PE=3 SV=1 | |
| 2 | RPOB_PSEP1 | 316 | DNA-directed RNA polymerase subunit beta OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rpoB PE=3 SV=1 | |
6| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RL1_PSEE4 | 451 | 50S ribosomal protein L1 OS=Pseudomonas entomophila (strain L48) GN=rplA PE=3 SV=1 |
7| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | OTCC_PSEPK | 445 | Ornithine carbamoyltransferase, catabolic OS=Pseudomonas putida (strain KT2440) GN=arcB PE=3 SV=3 |
8| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ARCA_PSEPK | 405 | Arginine deiminase OS=Pseudomonas putida (strain KT2440) GN=arcA PE=3 SV=1 |
| Score | Mass | Matches | Sequences | emPAI | |||
|---|---|---|---|---|---|---|---|
| 8.1 | ARCA_PSEPK |
405 | 46775 | 28 (13) | 13 (6) | 0.40 | |
| Arginine deiminase OS=Pseudomonas putida (strain KT2440) GN=arcA PE=3 SV=1 | |||||||
28 peptide matches (17 non-duplicate, 11 duplicate)| Query | Dupes | Observed | Mr(expt) | Mr(calc) | ppm | M | Score | Expect | Rank | U | Peptide |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Query | Dupes | Observed | Mr(expt) | Mr(calc) | ppm | M | Score | Expect | Rank | U | Peptide |
| 491 |
1 |
351.7018 | 701.3890 | 701.3860 | 4.28 | 0 | 30 | 0.12 | 1Score > 42 indicates identity Score > 33 indicates homology |
K.WILDR.K | |
| 969 |
925.5739 | 924.5666 | 924.5644 | 2.40 | 1 | 30 | 0.14 | 1Score > 34 indicates identity |
U | K.EVIVAGLPK.S | |
| 970 |
1 |
463.2914 | 924.5682 | 924.5644 | 4.15 | 1 | 23 | 0.23 | 1Score > 34 indicates identity Score > 29 indicates homology |
U | K.EVIVAGLPK.S |
| 1020 |
316.4915 | 946.4527 | 946.4508 | 1.94 | 1 | 12 | 3 | 6Score > 42 indicates identity Score > 29 indicates homology |
U | K.YGVHSEAGK.L | |
| 1022 |
474.2356 | 946.4566 | 946.4508 | 6.14 | 1 | 43 | 0.011 | 1Score > 42 indicates identity Score > 35 indicates homology |
U | K.YGVHSEAGK.L | |
| 1171 |
504.7436 | 1007.4726 | 1007.4713 | 1.37 | 0 | 22 | 0.85 | 1Score > 42 indicates identity Score > 33 indicates homology |
U | R.DHFDFVTK.M | |
| 1341 |
1 |
543.7883 | 1085.5620 | 1085.5505 | 10.6 | 1 | 37 | 0.071 | 1Score > 41 indicates identity Score > 38 indicates homology |
U | R.SWLEGLEPR.H |
| 1354 |
2 |
548.2964 | 1094.5782 | 1094.5720 | 5.70 | 0 | 57 | 0.00099 | 1Score > 39 indicates identity |
U | R.NTYTNTLLR.K |
| 1738 |
1 |
623.3646 | 1244.7146 | 1244.7017 | 10.4 | 1 | 12 | 0.15 | 1Score > 37 indicates identity Score > 16 indicates homology |
U | R.DLVTVFPEVVK.E |
| 1816 |
640.8595 | 1279.7044 | 1279.7023 | 1.64 | 1 | 15 | 0.73 | 1Score > 38 indicates identity Score > 26 indicates homology |
U | R.QETLLTTAIYK.F | |
| 1824 |
641.3600 | 1280.7054 | 1280.6864 | 14.9 | 1 | 10 | 1.2 | 2Score > 38 indicates identity Score > 23 indicates homology |
U | R.QETLLTTAIYK.F + Deamidated (NQ) | |
| 2080 |
2 |
701.4053 | 1400.7960 | 1400.7776 | 13.2 | 0 | 91 | 1.5e-007 | 1Score > 37 indicates identity Score > 35 indicates homology |
U | R.QAIGQLAQNLFAK.G |
| 2436 |
524.2897 | 1569.8473 | 1569.8363 | 7.02 | 1 | 57 | 5.8e-005 | 1Score > 39 indicates identity Score > 27 indicates homology |
U | K.ITPDTVGVGLTNEVR.S | |
| 2437 |
2 |
785.9312 | 1569.8478 | 1569.8363 | 7.38 | 1 | 77 | 6e-006 | 1Score > 39 indicates identity Score > 37 indicates homology |
U | K.ITPDTVGVGLTNEVR.S |
| 3257 |
1019.5556 | 2037.0966 | 2037.0565 | 19.7 | 1 | 88 | 3.5e-008 | 1Score > 36 indicates identity Score > 26 indicates homology |
U | R.GVDVLEMHNLLTDIVQNK.E | |
| 3883 |
1 |
816.0710 | 2445.1912 | 2445.1448 | 19.0 | 1 | 48 | 0.0066 | 1Score > 39 indicates identity |
U | R.EQWDDGNNVVAIEPGVVIGYDR.N + Deamidated (NQ) |
| 4108 |
904.7930 | 2711.3572 | 2711.3054 | 19.1 | 0 | 19 | 0.06 | 1Score > 37 indicates identity Score > 19 indicates homology |
U | K.MYNDYLGHSSFILPPLPNTQFTR.D + Deamidated (NQ) |
| Score | Mass | Subset of | |||
|---|---|---|---|---|---|
| ARCA_PSEPU |
99 | 46933 | 8.1 | ||
| Arginine deiminase OS=Pseudomonas putida GN=arcA PE=1 SV=1 | |||||
| ARCA1_RHIME |
76 | 46140 | 8.1 | ||
| Arginine deiminase 1 OS=Rhizobium meliloti GN=arcA1 PE=3 SV=1 | |||||
| 10 samesets of ARCA1_RHIME | |||||
| ARCA_PSEAE |
76 | 46806 | |||
| Arginine deiminase OS=Pseudomonas aeruginosa GN=arcA PE=1 SV=2 | |||||
| ARCA_RHIET |
76 | 46140 | |||
| Arginine deiminase OS=Rhizobium etli GN=arcA PE=3 SV=1 | |||||
| ARCA_RHIE6 |
76 | 46196 | |||
| Arginine deiminase OS=Rhizobium etli (strain CIAT 652) GN=arcA PE=3 SV=1 | |||||
| ARCA_BURMA |
76 | 46422 | |||
| Arginine deiminase OS=Burkholderia mallei GN=arcA PE=3 SV=1 | |||||
| ARCA_BURPS |
76 | 46422 | |||
| Arginine deiminase OS=Burkholderia pseudomallei GN=arcA PE=3 SV=1 | |||||
| ARCA_PSEMY |
76 | 46334 | |||
| Arginine deiminase OS=Pseudomonas mendocina (strain ymp) GN=arcA PE=3 SV=1 | |||||
| ARCA_BRAJA |
76 | 46780 | |||
| Arginine deiminase OS=Bradyrhizobium japonicum GN=arcA PE=3 SV=1 | |||||
| ARCA_MARMS |
76 | 46613 | |||
| Arginine deiminase OS=Marinomonas sp. (strain MWYL1) GN=arcA PE=3 SV=1 | |||||
| ARCA_RHILO |
76 | 46031 | |||
| Arginine deiminase OS=Rhizobium loti GN=arcA PE=3 SV=1 | |||||
| ARCA2_RHIME |
76 | 46880 | |||
| Arginine deiminase 2 OS=Rhizobium meliloti GN=arcA2 PE=3 SV=1 | |||||
9| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | DLDH2_PSEPU | 387 | Dihydrolipoamide dehydrogenase OS=Pseudomonas putida GN=lpdG PE=1 SV=4 |
10| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | DBHB_PSEAE | 318 | DNA-binding protein HU-beta OS=Pseudomonas aeruginosa GN=hupB PE=1 SV=3 |
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