MASCOT Search ResultsMASCOT Search Results| User | : | Jennifer |
|---|---|---|
| : | [email protected] | |
| Search title | : | Rita5 sp |
| MS data file | : | PRT1270_T-BRSC_5_20250714121805.mgf |
| Database | : | SwissProt 57.15 (515,203 sequences; 181,334,896 residues) |
| Timestamp | : | 12 Aug 2025 at 23:42:02 GMT |
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| Type of search | : | MS/MS Ion Search |
|---|---|---|
| Enzyme | : | GluC_Trypsin |
| Fixed modifications | : | Carbamidomethyl (C) |
| Variable modifications | : | Deamidated (NQ), Oxidation (M) |
| Mass values | : | Monoisotopic |
| Protein mass | : | Unrestricted |
| Peptide mass tolerance | : | ± 20 ppm |
| Fragment mass tolerance | : | ± 0.1 Da |
| Max missed cleavages | : | 1 |
| Instrument type | : | ESI-FTICR |
| Number of queries | : | 4,997 |
Peptide score distribution. Ions score is −10log(P), where P is the probability that the observed match is a random event. Individual ions scores > 39 indicate identity or extensive homology (p<0.05).
[Deprecated] Score distribution for family members in the first 50 proteins. Protein scores are derived from ions scores as a non-probabilistic basis for ranking protein families.
| Dupes | Expect | Rank | U | 1 | 2 | Peptide | |
|---|---|---|---|---|---|---|---|
| 0.037 |  2 |
GAYSLSLR | significant | ||||
| 9 | 1 |
GFFLFVEGGR | top ranking | ||||
| 6.4e-005 | 1 |
GSSIFGLAPGK | significant and top ranking | ||||
| 1.3e-006 | 1 |
 |
SSGTSYPDVLK | peptide is found in all proteins in family member 1 | |||
| 6.2e-007 | 1 |
 |
VCNYVSWIK | peptide is found in some but not all proteins in family member 2 | |||
| 6.4e-005 | 1 |
U | GSSIFGLAPGK | unique | |||
| 2 |
5.7e-005 | 1 |
LNTLETEEWFFK | peptide has two duplicates | |||
| 0.18 | 1 |
LNTLETEEWFFK | duplicate peptide |
Right-facing triangle () in the Dupes or Rank column indicates content that can be expanded by clicking on it. Down-facing triangle (
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1| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | EFTU2_PSEPK | 1313 | Elongation factor Tu-B OS=Pseudomonas putida (strain KT2440) GN=tufB PE=3 SV=1 | |
| 3 | EFTU_CARRP | 105 | Elongation factor Tu OS=Carsonella ruddii (strain PV) GN=tuf PE=3 SV=1 | |
| 2 | EFTU1_PSEPK | 1215 | Elongation factor Tu-A OS=Pseudomonas putida (strain KT2440) GN=tufA PE=3 SV=1 | |
2| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ATPB_PSEPG | 945 | ATP synthase subunit beta OS=Pseudomonas putida (strain GB-1) GN=atpD PE=3 SV=1 | |
| 2 | ATPB_PSEU5 | 708 | ATP synthase subunit beta OS=Pseudomonas stutzeri (strain A1501) GN=atpD PE=3 SV=1 | |
| 4 | ATPB_LEGPA | 195 | ATP synthase subunit beta OS=Legionella pneumophila (strain Paris) GN=atpD PE=3 SV=1 | |
| 3 | ATPB_PSE14 | 666 | ATP synthase subunit beta OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=atpD PE=3 SV=1 | |
3| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | CH60_PSEPK | 849 | 60 kDa chaperonin OS=Pseudomonas putida (strain KT2440) GN=groL PE=3 SV=1 | |
| 2 | CH602_SORC5 | 95 | 60 kDa chaperonin 2 OS=Sorangium cellulosum (strain So ce56) GN=groL2 PE=3 SV=1 | |
4| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ATPA_PSEPK | 777 | ATP synthase subunit alpha OS=Pseudomonas putida (strain KT2440) GN=atpA PE=3 SV=1 | |
| 2 | ATPA_RICAH | 168 | ATP synthase subunit alpha OS=Rickettsia akari (strain Hartford) GN=atpA PE=3 SV=1 | |
| 3 | ATPA_VEREI | 155 | ATP synthase subunit alpha OS=Verminephrobacter eiseniae (strain EF01-2) GN=atpA PE=3 SV=1 | |
5| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ARCA_PSEPK | 648 | Arginine deiminase OS=Pseudomonas putida (strain KT2440) GN=arcA PE=3 SV=1 |
6| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RL1_PSEE4 | 454 | 50S ribosomal protein L1 OS=Pseudomonas entomophila (strain L48) GN=rplA PE=3 SV=1 |
7| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ADHP_ECOLI | 447 | Alcohol dehydrogenase, propanol-preferring OS=Escherichia coli (strain K12) GN=adhP PE=1 SV=1 |
8| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | OTCC_PSEPK | 407 | Ornithine carbamoyltransferase, catabolic OS=Pseudomonas putida (strain KT2440) GN=arcB PE=3 SV=3 |
| Score | Mass | Matches | Sequences | emPAI | |||
|---|---|---|---|---|---|---|---|
| 8.1 | OTCC_PSEPK |
407 | 38115 | 33 (23) | 14 (10) | 1.56 | |
| Ornithine carbamoyltransferase, catabolic OS=Pseudomonas putida (strain KT2440) GN=arcB PE=3 SV=3 | |||||||
33 peptide matches (22 non-duplicate, 11 duplicate)| Query | Dupes | Observed | Mr(expt) | Mr(calc) | ppm | M | Score | Expect | Rank | U | Peptide |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Query | Dupes | Observed | Mr(expt) | Mr(calc) | ppm | M | Score | Expect | Rank | U | Peptide |
| 134 |
499.3258 | 498.3185 | 498.3166 | 3.94 | 0 | 46 | 0.0034 | 1Score > 34 indicates identity |
U | R.IAAPK.A | |
| 367 |
345.6849 | 689.3552 | 689.3530 | 3.20 | 0 | 35 | 0.34 | 1Score > 43 indicates identity |
K.LGMDVR.I | ||
| 753 |
436.2320 | 870.4494 | 870.4460 | 3.95 | 0 | 36 | 0.093 | 1Score > 39 indicates identity |
M.AFNIHNR.N | ||
| 774 |
879.4984 | 878.4911 | 878.4861 | 5.67 | 0 | 40 | 0.037 | 1Score > 38 indicates identity |
U | R.YLLDLSR.D | |
| 777 |
440.2534 | 878.4922 | 878.4861 | 6.95 | 0 | 29 | 0.44 | 5Score > 38 indicates identity |
U | R.YLLDLSR.D | |
| 864 |
916.5013 | 915.4940 | 915.4913 | 2.97 | 1 | 51 | 0.0087 | 1Score > 43 indicates identity |
U | R.ITLTEDPK.A | |
| 865 |
1 |
458.7545 | 915.4944 | 915.4913 | 3.44 | 1 | 42 | 0.016 | 1Score > 43 indicates identity Score > 37 indicates homology |
U | R.ITLTEDPK.A |
| 1108 |
3 |
1015.6149 | 1014.6076 | 1014.5961 | 11.4 | 0 | 21 | 0.55 | 1Score > 37 indicates identity Score > 31 indicates homology |
U | K.AILVSTLADL.- |
| 1196 |
530.7438 | 1059.4730 | 1059.4695 | 3.35 | 1 | 41 | 0.034 | 1Score > 39 indicates identity |
U | R.MYDAIEYR.G | |
| 1295 |
1118.6283 | 1117.6210 | 1117.6131 | 7.06 | 1 | 73 | 2.6e-005 | 1Score > 39 indicates identity |
U | K.GNNIALIFEK.T | |
| 1296 |
1 |
559.8188 | 1117.6230 | 1117.6131 | 8.88 | 1 | 54 | 0.00074 | 1Score > 39 indicates identity Score > 36 indicates homology |
U | K.GNNIALIFEK.T |
| 1501 |
1 |
402.2043 | 1203.5911 | 1203.5884 | 2.23 | 1 | 49 | 0.00046 | 1Score > 42 indicates identity Score > 28 indicates homology |
U | K.YTGTEQQHLK.G |
| 1502 |
602.8032 | 1203.5918 | 1203.5884 | 2.87 | 1 | 50 | 0.00054 | 1Score > 42 indicates identity Score > 30 indicates homology |
U | K.YTGTEQQHLK.G | |
| 1752 |
330.9321 | 1319.6993 | 1319.6946 | 3.57 | 1 | 56 | 0.00032 | 1Score > 40 indicates identity Score > 34 indicates homology |
U | R.NLLSLEHHTTR.E | |
| 1754 |
2 |
440.9074 | 1319.7004 | 1319.6946 | 4.39 | 1 | 49 | 0.00044 | 1Score > 40 indicates identity Score > 28 indicates homology |
U | R.NLLSLEHHTTR.E |
| 1755 |
660.8577 | 1319.7008 | 1319.6946 | 4.75 | 1 | 58 | 0.00029 | 1Score > 40 indicates identity Score > 36 indicates homology |
U | R.NLLSLEHHTTR.E | |
| 1811 |
1 |
672.8756 | 1343.7366 | 1343.7231 | 10.1 | 0 | 68 | 8.7e-006 | 1Score > 39 indicates identity Score > 30 indicates homology |
U | R.NNMGNSLLLIGAK.L |
| 1817 |
2 |
450.9000 | 1349.6782 | 1349.6728 | 3.99 | 1 | 42 | 0.0016 | 1Score > 41 indicates identity Score > 27 indicates homology |
U | K.ALWPHDDLVER.C |
| 1819 |
675.8475 | 1349.6804 | 1349.6728 | 5.67 | 1 | 34 | 0.016 | 1Score > 41 indicates identity Score > 28 indicates homology |
U | K.ALWPHDDLVER.C | |
| 2256 |
521.2881 | 1560.8425 | 1560.8334 | 5.84 | 1 | 25 | 0.072 | 1Score > 39 indicates identity Score > 27 indicates homology |
U | K.QLKPYQVNAELMK.S | |
| 4369 |
756.3902 | 3021.5317 | 3021.4729 | 19.5 | 1 | 11 | 0.25 | 1Score > 36 indicates identity Score > 18 indicates homology |
U | K.FAGVPVFNGLTDEYHPTQMIADVLTMR.E | |
D:\Xcalibur\Data\Jennifer\PRT1270 Rita DDA\PRT1270_T-BRSC_5_20250714121805.rawScore > 36 indicates identity Score > 19 indicates homology |
|||||||||||
| 4370 |
1008.5087 | 3022.5043 | 3022.4569 | 15.7 | 1 | 58 | 7.1e-006 | 1Score > 36 indicates identity Score > 19 indicates homology |
U | K.FAGVPVFNGLTDEYHPTQMIADVLTMR.E + Deamidated (NQ) | |
| 15.7 | 1 | 58 | 7.1e-006 | 1 | FAGVPVFNGLTDEYHPTQMLADVLTMR + Deamidated (NQ) | ||||||
| 15.7 | 1 | 46 | 9.9e-005 | 3 | K.FAGVPVFNGLTDEYHPTQMIADVLTMR.E + Deamidated (NQ) | ||||||
| 15.7 | 1 | 46 | 9.9e-005 | 3 | FAGVPVFNGLTDEYHPTQMLADVLTMR + Deamidated (NQ) | ||||||
| 10.3 | 0 | 3 | 2.2 | 5 | TLGVVYAPLQYPGGQTQLTNINAIMVQE + 5 Deamidated (NQ) | ||||||
| Score | Mass | Subset of | |||
|---|---|---|---|---|---|
| OTCC_PSEAE |
201 | 38255 | 8.1 | ||
| Ornithine carbamoyltransferase, catabolic OS=Pseudomonas aeruginosa GN=arcB PE=1 SV=3 | |||||
| OTCC_PSEME |
164 | 38189 | 8.1 | ||
| Ornithine carbamoyltransferase, catabolic OS=Pseudomonas mendocina GN=arcB PE=3 SV=3 | |||||
| OTCC_BURMA |
91 | 38278 | 8.1 | ||
| Ornithine carbamoyltransferase, catabolic OS=Burkholderia mallei GN=arcB PE=3 SV=1 | |||||
| 3 samesets of OTCC_BURMA | |||||
| OTCC_BURPS |
91 | 38278 | |||
| Ornithine carbamoyltransferase, catabolic OS=Burkholderia pseudomallei GN=arcB PE=3 SV=1 | |||||
| OTCC_HAEGA |
91 | 37705 | |||
| Ornithine carbamoyltransferase, catabolic OS=Haemophilus gallinarum GN=arcB PE=3 SV=1 | |||||
| OTC_HAEDU |
91 | 37722 | |||
| Ornithine carbamoyltransferase OS=Haemophilus ducreyi GN=argF PE=3 SV=1 | |||||
| OTCC_HAEIN |
91 | 37908 | 8.1 | ||
| Ornithine carbamoyltransferase, catabolic OS=Haemophilus influenzae GN=arcB PE=3 SV=1 | |||||
| 1 sameset of OTCC_HAEIN | |||||
| OTC_HAEIG |
91 | 37881 | |||
| Ornithine carbamoyltransferase OS=Haemophilus influenzae (strain PittGG) GN=arcB PE=3 SV=1 | |||||
| OTC_MANSM |
88 | 37793 | 8.1 | ||
| Ornithine carbamoyltransferase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=argF PE=3 SV=1 | |||||
| OTCC_CHRVO |
56 | 38025 | 8.1 | ||
| Ornithine carbamoyltransferase, catabolic OS=Chromobacterium violaceum GN=arcB PE=3 SV=1 | |||||
| AMN1_PICAN |
46 | 0 | 8.1 | ||
| description | |||||
| 19 samesets of AMN1_PICAN | |||||
| OTC_CLOAB |
46 | 0 | |||
| description | |||||
| YHC3_SCHPO |
46 | 0 | |||
| description | |||||
| SYA_IGNH4 |
46 | 0 | |||
| description | |||||
| CIPKB_ORYSJ |
46 | 0 | |||
| description | |||||
| IML1_NEUCR |
46 | 0 | |||
| description | |||||
| CHDM_DROME |
46 | 0 | |||
| description | |||||
| FAS_RAT |
46 | 0 | |||
| description | |||||
| GB_MCMVS |
46 | 0 | |||
| description | |||||
| MURI_LACAC |
46 | 0 | |||
| description | |||||
| THEG_HUMAN |
46 | 0 | |||
| description | |||||
| BOP1_DICDI |
46 | 0 | |||
| description | |||||
| DOP1_EMENI |
46 | 0 | |||
| description | |||||
| DNAE2_RALPJ |
46 | 0 | |||
| description | |||||
| DNAE2_RALSO |
46 | 0 | |||
| description | |||||
| IMPA3_MOUSE |
46 | 0 | |||
| description | |||||
| RL3_SPHWW |
46 | 0 | |||
| description | |||||
| RS4_DROME |
46 | 0 | |||
| description | |||||
| RL32_CARHZ |
46 | 0 | |||
| description | |||||
| UNC53_CAEEL |
46 | 0 | |||
| description | |||||
| OTCC_RHIET |
41 | 38135 | 8.1 | ||
| Ornithine carbamoyltransferase, catabolic OS=Rhizobium etli GN=arcB PE=3 SV=1 | |||||
| 12 samesets of OTCC_RHIET | |||||
| OTC_ACTPJ |
41 | 37600 | |||
| Ornithine carbamoyltransferase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=arcB PE=3 SV=1 | |||||
| OTC_NEIGO |
41 | 36823 | |||
| Ornithine carbamoyltransferase OS=Neisseria gonorrhoeae GN=argF PE=3 SV=1 | |||||
| OTC_NEILA |
41 | 28761 | |||
| Ornithine carbamoyltransferase (Fragment) OS=Neisseria lactamica GN=argF PE=3 SV=1 | |||||
| OTC_NEIMA |
41 | 36795 | |||
| Ornithine carbamoyltransferase OS=Neisseria meningitidis serogroup A GN=argF PE=3 SV=1 | |||||
| OTC_NEIMB |
41 | 36807 | |||
| Ornithine carbamoyltransferase OS=Neisseria meningitidis serogroup B GN=argF PE=3 SV=1 | |||||
| OTC_NEIME |
41 | 28974 | |||
| Ornithine carbamoyltransferase (Fragment) OS=Neisseria meningitidis GN=argF PE=3 SV=2 | |||||
| OTC_NEIPE |
41 | 25521 | |||
| Ornithine carbamoyltransferase (Fragment) OS=Neisseria perflava GN=argF PE=3 SV=1 | |||||
| OTC_NEIPO |
41 | 28876 | |||
| Ornithine carbamoyltransferase (Fragment) OS=Neisseria polysaccharea GN=argF PE=3 SV=1 | |||||
| OTC_NEIG1 |
41 | 36768 | |||
| Ornithine carbamoyltransferase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=argF PE=3 SV=1 | |||||
| OTC_ACTP2 |
41 | 37600 | |||
| Ornithine carbamoyltransferase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=argF PE=3 SV=1 | |||||
| OTC_ACTP7 |
41 | 37600 | |||
| Ornithine carbamoyltransferase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=arcB PE=3 SV=1 | |||||
| OTCC_RHIME |
41 | 37978 | |||
| Ornithine carbamoyltransferase, catabolic OS=Rhizobium meliloti GN=arcB PE=3 SV=1 | |||||
| OTCC_MYCCC |
40 | 35232 | 8.1 | ||
| Ornithine carbamoyltransferase, catabolic OS=Mycoplasma capricolum subsp. capripneumoniae GN=arcB PE=3 SV=1 | |||||
| 1 sameset of OTCC_MYCCC | |||||
| THI22_YEAST |
40 | 64521 | |||
| Thiamine biosynthesis protein THI22 OS=Saccharomyces cerevisiae GN=THI22 PE=2 SV=1 | |||||
9| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RPOB_PSEPG | 398 | DNA-directed RNA polymerase subunit beta OS=Pseudomonas putida (strain GB-1) GN=rpoB PE=3 SV=1 | |
| 6 | RPOB_CHRSD | 115 | DNA-directed RNA polymerase subunit beta OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rpoB PE=3 SV=1 | |
| 3 | RPOB_SACD2 | 141 | DNA-directed RNA polymerase subunit beta OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=rpoB PE=3 SV=1 | |
| 5 | FTSZ_PSEPK | 123 | Cell division protein ftsZ OS=Pseudomonas putida (strain KT2440) GN=ftsZ PE=3 SV=3 | |
| 2 | RPOC_PSEE4 | 267 | DNA-directed RNA polymerase subunit beta' OS=Pseudomonas entomophila (strain L48) GN=rpoC PE=3 SV=1 | |
| 7 | RPOC_COXBN | 77 | DNA-directed RNA polymerase subunit beta' OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rpoC PE=3 SV=1 | |
| 4 | RPOC_SYNAS | 131 | DNA-directed RNA polymerase subunit beta' OS=Syntrophus aciditrophicus (strain SB) GN=rpoC PE=3 SV=1 | |
10| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | SAHH_PSEP1 | 340 | Adenosylhomocysteinase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ahcY PE=3 SV=1 |
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