MASCOT Search ResultsMASCOT Search Results| User | : | Jennifer |
|---|---|---|
| : | [email protected] | |
| Search title | : | Rita5 sp |
| MS data file | : | PRT1270_T-BRSC_5_20250714121805.mgf |
| Database | : | SwissProt 57.15 (515,203 sequences; 181,334,896 residues) |
| Timestamp | : | 12 Aug 2025 at 23:42:02 GMT |
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| Type of search | : | MS/MS Ion Search |
|---|---|---|
| Enzyme | : | GluC_Trypsin |
| Fixed modifications | : | Carbamidomethyl (C) |
| Variable modifications | : | Deamidated (NQ), Oxidation (M) |
| Mass values | : | Monoisotopic |
| Protein mass | : | Unrestricted |
| Peptide mass tolerance | : | ± 20 ppm |
| Fragment mass tolerance | : | ± 0.1 Da |
| Max missed cleavages | : | 1 |
| Instrument type | : | ESI-FTICR |
| Number of queries | : | 4,997 |
Peptide score distribution. Ions score is −10log(P), where P is the probability that the observed match is a random event. Individual ions scores > 39 indicate identity or extensive homology (p<0.05).
[Deprecated] Score distribution for family members in the first 50 proteins. Protein scores are derived from ions scores as a non-probabilistic basis for ranking protein families.
| Dupes | Expect | Rank | U | 1 | 2 | Peptide | |
|---|---|---|---|---|---|---|---|
| 0.037 |  2 |
GAYSLSLR | significant | ||||
| 9 | 1 |
GFFLFVEGGR | top ranking | ||||
| 6.4e-005 | 1 |
GSSIFGLAPGK | significant and top ranking | ||||
| 1.3e-006 | 1 |
 |
SSGTSYPDVLK | peptide is found in all proteins in family member 1 | |||
| 6.2e-007 | 1 |
 |
VCNYVSWIK | peptide is found in some but not all proteins in family member 2 | |||
| 6.4e-005 | 1 |
U | GSSIFGLAPGK | unique | |||
| 2 |
5.7e-005 | 1 |
LNTLETEEWFFK | peptide has two duplicates | |||
| 0.18 | 1 |
LNTLETEEWFFK | duplicate peptide |
Right-facing triangle () in the Dupes or Rank column indicates content that can be expanded by clicking on it. Down-facing triangle (
) indicates the content is expanded and can be collapsed. For more details about particular columns, see results format help.
111| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RS3_PSEE4 | 52 | 30S ribosomal protein S3 OS=Pseudomonas entomophila (strain L48) GN=rpsC PE=3 SV=1 |
| Score | Mass | Matches | Sequences | emPAI | |||
|---|---|---|---|---|---|---|---|
| 111.1 | RS3_PSEE4 |
52 | 25709 | 18 (2) | 9 (2) | 0.19 | |
| 30S ribosomal protein S3 OS=Pseudomonas entomophila (strain L48) GN=rpsC PE=3 SV=1 | |||||||
| 3 samesets of RS3_PSEE4 | |||||||
| RS3_PSEP1 |
52 | 25709 | 18 (2) | 9 (2) | 0.19 | ||
| 30S ribosomal protein S3 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rpsC PE=3 SV=1 | |||||||
| RS3_PSEPK |
52 | 25709 | 18 (2) | 9 (2) | 0.19 | ||
| 30S ribosomal protein S3 OS=Pseudomonas putida (strain KT2440) GN=rpsC PE=3 SV=2 | |||||||
| RS3_PSEU5 |
52 | 25730 | 18 (2) | 9 (2) | 0.19 | ||
| 30S ribosomal protein S3 OS=Pseudomonas stutzeri (strain A1501) GN=rpsC PE=3 SV=1 | |||||||
18 peptide matches (15 non-duplicate, 3 duplicate)| Query | Dupes | Observed | Mr(expt) | Mr(calc) | ppm | M | Score | Expect | Rank | U | Peptide |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Query | Dupes | Observed | Mr(expt) | Mr(calc) | ppm | M | Score | Expect | Rank | U | Peptide |
| 303 |
659.3859 | 658.3786 | 658.3762 | 3.65 | 0 | 35 | 0.26 | 1Score > 42 indicates identity |
K.IQVSGR.L | ||
| 304 |
330.1967 | 658.3788 | 658.3762 | 3.99 | 0 | 32 | 0.16 | 1Score > 42 indicates identity Score > 36 indicates homology |
K.IQVSGR.L | ||
| 370 |
346.7122 | 691.4098 | 691.4057 | 5.95 | 0 | 18 | 0.13 | 1Score > 37 indicates identity Score > 22 indicates homology |
K.VWIFK.G | ||
| 495 |
377.6812 | 753.3478 | 753.3446 | 4.35 | 1 | 27 | 0.076 | 1Score > 39 indicates identity Score > 29 indicates homology |
R.TEWYR.E | ||
| 566 |
393.7285 | 785.4424 | 785.4395 | 3.72 | 1 | 26 | 0.84 | 1Score > 43 indicates identity Score > 38 indicates homology |
R.LGGAEIAR.T | ||
| 576 |
395.2063 | 788.3980 | 788.3963 | 2.23 | 0 | 18 | 0.31 | 1Score > 43 indicates identity Score > 25 indicates homology |
R.AVQNAMR.I | ||
| 577 |
789.4059 | 788.3986 | 788.3963 | 2.97 | 0 | 26 | 0.49 | 1Score > 44 indicates identity Score > 35 indicates homology |
R.AVQNAMR.I | ||
| 591 |
795.3909 | 794.3836 | 794.3810 | 3.29 | 1 | 32 | 0.47 | 1Score > 41 indicates identity |
R.EYLQDK.L | ||
| 593 |
398.1999 | 794.3852 | 794.3810 | 5.33 | 1 | 14 | 0.63 | 1Score > 41 indicates identity Score > 25 indicates homology |
R.EYLQDK.L | ||
| 1666 |
1 |
320.1834 | 1276.7045 | 1276.7000 | 3.52 | 0 | 10 | 0.67 | 1Score > 38 indicates identity Score > 21 indicates homology |
U | R.IDIHRPAQTAR.I |
| 1668 |
639.3600 | 1276.7054 | 1276.7000 | 4.27 | 0 | 27 | 0.2 | 1Score > 38 indicates identity Score > 33 indicates homology |
U | R.IDIHRPAQTAR.I | |
| 1669 |
426.5761 | 1276.7065 | 1276.7000 | 5.07 | 0 | 17 | 0.32 | 1Score > 38 indicates identity Score > 25 indicates homology |
U | R.IDIHRPAQTAR.I | |
| 2077 |
2 |
369.7336 | 1474.9053 | 1474.8984 | 4.69 | 0 | 10 | 1 | 1Score > 26 indicates identity Score > 23 indicates homology |
U | R.ITIHTARPGIVIGK.K |
| 2078 |
492.6430 | 1474.9072 | 1474.8984 | 5.96 | 0 | 24 | 0.013 | 1Score > 25 indicates identity Score > 17 indicates homology |
U | R.ITIHTARPGIVIGK.K | |
| 3509 |
744.3650 | 2230.0732 | 2230.0430 | 13.5 | 1 | 48 | 0.00017 | 1Score > 39 indicates identity Score > 22 indicates homology |
U | R.ADIDYNTYEAHTTYGVIGVK.V + Deamidated (NQ) |
| Score | Mass | Subset of | |||
|---|---|---|---|---|---|
| RS3_CHRSD |
24 | 26097 | 111.1 | ||
| 30S ribosomal protein S3 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rpsC PE=3 SV=1 | |||||
| 18 samesets of RS3_CHRSD | |||||
| RS3_PSE14 |
24 | 25737 | |||
| 30S ribosomal protein S3 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=rpsC PE=3 SV=1 | |||||
| RS3_PSEA7 |
24 | 25822 | |||
| 30S ribosomal protein S3 OS=Pseudomonas aeruginosa (strain PA7) GN=rpsC PE=3 SV=1 | |||||
| RS3_PSEAB |
24 | 25822 | |||
| 30S ribosomal protein S3 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rpsC PE=3 SV=1 | |||||
| RS3_PSEAE |
24 | 25822 | |||
| 30S ribosomal protein S3 OS=Pseudomonas aeruginosa GN=rpsC PE=3 SV=1 | |||||
| RS3_PSEF5 |
24 | 25676 | |||
| 30S ribosomal protein S3 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rpsC PE=3 SV=1 | |||||
| RS3_PSEPF |
24 | 25737 | |||
| 30S ribosomal protein S3 OS=Pseudomonas fluorescens (strain Pf0-1) GN=rpsC PE=3 SV=1 | |||||
| RS3_PSESM |
24 | 25737 | |||
| 30S ribosomal protein S3 OS=Pseudomonas syringae pv. tomato GN=rpsC PE=3 SV=1 | |||||
| RS3_PSEU2 |
24 | 25737 | |||
| 30S ribosomal protein S3 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=rpsC PE=3 SV=1 | |||||
| RS3_PSEMY |
24 | 25525 | |||
| 30S ribosomal protein S3 OS=Pseudomonas mendocina (strain ymp) GN=rpsC PE=3 SV=1 | |||||
| RS3_HAHCH |
24 | 25467 | |||
| 30S ribosomal protein S3 OS=Hahella chejuensis (strain KCTC 2396) GN=rpsC PE=3 SV=1 | |||||
| RS3_MARAV |
24 | 25498 | |||
| 30S ribosomal protein S3 OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=rpsC PE=3 SV=1 | |||||
| RS3_FRATF |
24 | 24862 | |||
| 30S ribosomal protein S3 OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=rpsC PE=3 SV=1 | |||||
| RS3_FRATH |
24 | 24862 | |||
| 30S ribosomal protein S3 OS=Francisella tularensis subsp. holarctica (strain LVS) GN=rpsC PE=3 SV=1 | |||||
| RS3_FRATM |
24 | 24848 | |||
| 30S ribosomal protein S3 OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=rpsC PE=3 SV=1 | |||||
| RS3_FRATN |
24 | 24792 | |||
| 30S ribosomal protein S3 OS=Francisella tularensis subsp. novicida (strain U112) GN=rpsC PE=3 SV=1 | |||||
| RS3_FRATO |
24 | 24862 | |||
| 30S ribosomal protein S3 OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=rpsC PE=3 SV=1 | |||||
| RS3_FRATW |
24 | 24862 | |||
| 30S ribosomal protein S3 OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=rpsC PE=3 SV=1 | |||||
| RS3_NITOC |
24 | 24932 | |||
| 30S ribosomal protein S3 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=rpsC PE=3 SV=1 | |||||
112| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | THIO_PSEAE | 52 | Thioredoxin OS=Pseudomonas aeruginosa GN=trxA PE=3 SV=1 |
113| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RS18_PSEE4 | 52 | 30S ribosomal protein S18 OS=Pseudomonas entomophila (strain L48) GN=rpsR PE=3 SV=1 |
114| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | POLG_HAVNO | 51 | Genome polyprotein OS=Human hepatitis A virus genotype IIIA (isolate NOR-21) PE=3 SV=4 |
115| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ASPA_PSEFL | 51 | Aspartate ammonia-lyase OS=Pseudomonas fluorescens GN=aspA PE=3 SV=1 |
116| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | DHQS_METLZ | 51 | 3-dehydroquinate synthase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=Mlab_1653 PE=3 SV=1 |
117| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RL16_PSEF5 | 50 | 50S ribosomal protein L16 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rplP PE=3 SV=1 |
118| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RPOB_OLTVI | 50 | DNA-directed RNA polymerase subunit beta OS=Oltmannsiellopsis viridis GN=rpoB PE=3 SV=1 |
119| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RRAA_PSEPG | 50 | Regulator of ribonuclease activity A OS=Pseudomonas putida (strain GB-1) GN=rraA PE=3 SV=1 |
120| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | CYOB_PSEPU | 50 | Ubiquinol oxidase subunit 1 OS=Pseudomonas putida GN=cyoB PE=3 SV=1 |
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