MASCOT Search ResultsMASCOT Search Results| User | : | Jennifer |
|---|---|---|
| : | [email protected] | |
| Search title | : | Rita5 sp |
| MS data file | : | PRT1270_T-BRSC_5_20250714121805.mgf |
| Database | : | SwissProt 57.15 (515,203 sequences; 181,334,896 residues) |
| Timestamp | : | 12 Aug 2025 at 23:42:02 GMT |
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| Type of search | : | MS/MS Ion Search |
|---|---|---|
| Enzyme | : | GluC_Trypsin |
| Fixed modifications | : | Carbamidomethyl (C) |
| Variable modifications | : | Deamidated (NQ), Oxidation (M) |
| Mass values | : | Monoisotopic |
| Protein mass | : | Unrestricted |
| Peptide mass tolerance | : | ± 20 ppm |
| Fragment mass tolerance | : | ± 0.1 Da |
| Max missed cleavages | : | 1 |
| Instrument type | : | ESI-FTICR |
| Number of queries | : | 4,997 |
Peptide score distribution. Ions score is −10log(P), where P is the probability that the observed match is a random event. Individual ions scores > 39 indicate identity or extensive homology (p<0.05).
[Deprecated] Score distribution for family members in the first 50 proteins. Protein scores are derived from ions scores as a non-probabilistic basis for ranking protein families.
| Dupes | Expect | Rank | U | 1 | 2 | Peptide | |
|---|---|---|---|---|---|---|---|
| 0.037 |  2 |
GAYSLSLR | significant | ||||
| 9 | 1 |
GFFLFVEGGR | top ranking | ||||
| 6.4e-005 | 1 |
GSSIFGLAPGK | significant and top ranking | ||||
| 1.3e-006 | 1 |
 |
SSGTSYPDVLK | peptide is found in all proteins in family member 1 | |||
| 6.2e-007 | 1 |
 |
VCNYVSWIK | peptide is found in some but not all proteins in family member 2 | |||
| 6.4e-005 | 1 |
U | GSSIFGLAPGK | unique | |||
| 2 |
5.7e-005 | 1 |
LNTLETEEWFFK | peptide has two duplicates | |||
| 0.18 | 1 |
LNTLETEEWFFK | duplicate peptide |
Right-facing triangle () in the Dupes or Rank column indicates content that can be expanded by clicking on it. Down-facing triangle (
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1| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | EFTU2_PSEPK | 1313 | Elongation factor Tu-B OS=Pseudomonas putida (strain KT2440) GN=tufB PE=3 SV=1 | |
| 3 | EFTU_CARRP | 105 | Elongation factor Tu OS=Carsonella ruddii (strain PV) GN=tuf PE=3 SV=1 | |
| 2 | EFTU1_PSEPK | 1215 | Elongation factor Tu-A OS=Pseudomonas putida (strain KT2440) GN=tufA PE=3 SV=1 | |
2| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ATPB_PSEPG | 945 | ATP synthase subunit beta OS=Pseudomonas putida (strain GB-1) GN=atpD PE=3 SV=1 | |
| 2 | ATPB_PSEU5 | 708 | ATP synthase subunit beta OS=Pseudomonas stutzeri (strain A1501) GN=atpD PE=3 SV=1 | |
| 4 | ATPB_LEGPA | 195 | ATP synthase subunit beta OS=Legionella pneumophila (strain Paris) GN=atpD PE=3 SV=1 | |
| 3 | ATPB_PSE14 | 666 | ATP synthase subunit beta OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=atpD PE=3 SV=1 | |
3| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | CH60_PSEPK | 849 | 60 kDa chaperonin OS=Pseudomonas putida (strain KT2440) GN=groL PE=3 SV=1 | |
| 2 | CH602_SORC5 | 95 | 60 kDa chaperonin 2 OS=Sorangium cellulosum (strain So ce56) GN=groL2 PE=3 SV=1 | |
4| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ATPA_PSEPK | 777 | ATP synthase subunit alpha OS=Pseudomonas putida (strain KT2440) GN=atpA PE=3 SV=1 | |
| 2 | ATPA_RICAH | 168 | ATP synthase subunit alpha OS=Rickettsia akari (strain Hartford) GN=atpA PE=3 SV=1 | |
| 3 | ATPA_VEREI | 155 | ATP synthase subunit alpha OS=Verminephrobacter eiseniae (strain EF01-2) GN=atpA PE=3 SV=1 | |
5| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ARCA_PSEPK | 648 | Arginine deiminase OS=Pseudomonas putida (strain KT2440) GN=arcA PE=3 SV=1 |
| Score | Mass | Matches | Sequences | emPAI | |||
|---|---|---|---|---|---|---|---|
| 5.1 | ARCA_PSEPK |
648 | 46775 | 31 (22) | 13 (10) | 0.96 | |
| Arginine deiminase OS=Pseudomonas putida (strain KT2440) GN=arcA PE=3 SV=1 | |||||||
31 peptide matches (20 non-duplicate, 11 duplicate)| Query | Dupes | Observed | Mr(expt) | Mr(calc) | ppm | M | Score | Expect | Rank | U | Peptide |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Query | Dupes | Observed | Mr(expt) | Mr(calc) | ppm | M | Score | Expect | Rank | U | Peptide |
| 234 |
621.2911 | 620.2838 | 620.2806 | 5.23 | 0 | 13 | 0.13 | 1Score > 42 indicates identity Score > 17 indicates homology |
U | R.DPINY.- | |
| 389 |
702.3952 | 701.3879 | 701.3860 | 2.68 | 0 | 25 | 0.76 | 1Score > 42 indicates identity Score > 37 indicates homology |
K.WILDR.K | ||
| 391 |
351.7019 | 701.3892 | 701.3860 | 4.56 | 0 | 19 | 0.67 | 1Score > 42 indicates identity Score > 30 indicates homology |
K.WILDR.K | ||
| 891 |
925.5732 | 924.5659 | 924.5644 | 1.64 | 1 | 46 | 0.0034 | 1Score > 34 indicates identity |
U | K.EVIVAGLPK.S | |
| 892 |
1 |
463.2916 | 924.5686 | 924.5644 | 4.59 | 1 | 28 | 0.26 | 1Score > 34 indicates identity |
U | K.EVIVAGLPK.S |
| 893 |
463.2923 | 924.5700 | 924.5644 | 6.10 | 1 | (21) | 0.16 | 1Score > 34 indicates identity Score > 25 indicates homology |
U | K.EVIVAGLPK.S | |
| 944 |
316.4931 | 946.4575 | 946.4508 | 7.01 | 1 | 17 | 0.36 | 1Score > 42 indicates identity Score > 25 indicates homology |
U | K.YGVHSEAGK.L | |
| 1089 |
504.7437 | 1007.4728 | 1007.4713 | 1.57 | 0 | 27 | 0.31 | 1Score > 42 indicates identity Score > 35 indicates homology |
U | R.DHFDFVTK.M | |
| 1090 |
336.8321 | 1007.4745 | 1007.4713 | 3.18 | 0 | 31 | 0.048 | 1Score > 42 indicates identity Score > 30 indicates homology |
U | R.DHFDFVTK.M | |
| 1246 |
1086.5675 | 1085.5602 | 1085.5505 | 8.92 | 1 | 47 | 0.014 | 1Score > 41 indicates identity |
U | R.SWLEGLEPR.H | |
| 1247 |
2 |
543.7879 | 1085.5612 | 1085.5505 | 9.87 | 1 | 45 | 0.023 | 1Score > 41 indicates identity |
U | R.SWLEGLEPR.H |
| 1262 |
1095.5824 | 1094.5751 | 1094.5720 | 2.85 | 0 | 59 | 0.00052 | 1Score > 39 indicates identity |
U | R.NTYTNTLLR.K | |
| 1264 |
1 |
548.2959 | 1094.5772 | 1094.5720 | 4.79 | 0 | 59 | 0.00063 | 1Score > 39 indicates identity |
U | R.NTYTNTLLR.K |
| 1616 |
623.3654 | 1244.7162 | 1244.7017 | 11.7 | 1 | 26 | 0.015 | 1Score > 36 indicates identity Score > 20 indicates homology |
U | R.DLVTVFPEVVK.E | |
| 1675 |
640.8647 | 1279.7148 | 1279.7023 | 9.77 | 1 | 58 | 0.00017 | 1Score > 37 indicates identity Score > 33 indicates homology |
U | R.QETLLTTAIYK.F | |
| 1927 |
2 |
701.4050 | 1400.7954 | 1400.7776 | 12.8 | 0 | 92 | 1.7e-007 | 1Score > 37 indicates identity |
U | R.QAIGQLAQNLFAK.G |
| 2279 |
2 |
785.9321 | 1569.8496 | 1569.8363 | 8.53 | 1 | 79 | 3.9e-006 | 1Score > 39 indicates identity Score > 37 indicates homology |
U | K.ITPDTVGVGLTNEVR.S |
| 2280 |
524.2906 | 1569.8500 | 1569.8363 | 8.74 | 1 | 51 | 4.7e-005 | 1Score > 39 indicates identity Score > 21 indicates homology |
U | K.ITPDTVGVGLTNEVR.S | |
| 3128 |
1 |
1019.5478 | 2037.0810 | 2037.0565 | 12.1 | 1 | 100 | 1.7e-008 | 1Score > 37 indicates identity Score > 35 indicates homology |
U | R.GVDVLEMHNLLTDIVQNK.E |
| 3130 |
1 |
680.0353 | 2037.0841 | 2037.0565 | 13.5 | 1 | 60 | 1.7e-005 | 1Score > 37 indicates identity Score > 25 indicates homology |
U | R.GVDVLEMHNLLTDIVQNK.E |
| 3830 |
1 |
816.0706 | 2445.1900 | 2445.1448 | 18.5 | 1 | 62 | 0.00024 | 1Score > 39 indicates identity |
U | R.EQWDDGNNVVAIEPGVVIGYDR.N + Deamidated (NQ) |
| Score | Mass | Subset of | |||
|---|---|---|---|---|---|
| ARCA_PSEPU |
169 | 46933 | 5.1 | ||
| Arginine deiminase OS=Pseudomonas putida GN=arcA PE=1 SV=1 | |||||
| ARCA_PSEAE |
111 | 46806 | 5.1 | ||
| Arginine deiminase OS=Pseudomonas aeruginosa GN=arcA PE=1 SV=2 | |||||
| ARCA1_RHIME |
105 | 46140 | 5.1 | ||
| Arginine deiminase 1 OS=Rhizobium meliloti GN=arcA1 PE=3 SV=1 | |||||
| 2 samesets of ARCA1_RHIME | |||||
| ARCA_RHIET |
105 | 46140 | |||
| Arginine deiminase OS=Rhizobium etli GN=arcA PE=3 SV=1 | |||||
| ARCA_RHIE6 |
105 | 46196 | |||
| Arginine deiminase OS=Rhizobium etli (strain CIAT 652) GN=arcA PE=3 SV=1 | |||||
| ARCA2_RHIME |
85 | 46880 | 5.1 | ||
| Arginine deiminase 2 OS=Rhizobium meliloti GN=arcA2 PE=3 SV=1 | |||||
| 6 samesets of ARCA2_RHIME | |||||
| ARCA_BURMA |
85 | 46422 | |||
| Arginine deiminase OS=Burkholderia mallei GN=arcA PE=3 SV=1 | |||||
| ARCA_BURPS |
85 | 46422 | |||
| Arginine deiminase OS=Burkholderia pseudomallei GN=arcA PE=3 SV=1 | |||||
| ARCA_PSEMY |
85 | 46334 | |||
| Arginine deiminase OS=Pseudomonas mendocina (strain ymp) GN=arcA PE=3 SV=1 | |||||
| ARCA_BRAJA |
85 | 46780 | |||
| Arginine deiminase OS=Bradyrhizobium japonicum GN=arcA PE=3 SV=1 | |||||
| ARCA_MARMS |
85 | 46613 | |||
| Arginine deiminase OS=Marinomonas sp. (strain MWYL1) GN=arcA PE=3 SV=1 | |||||
| ARCA_RHILO |
85 | 46031 | |||
| Arginine deiminase OS=Rhizobium loti GN=arcA PE=3 SV=1 | |||||
6| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RL1_PSEE4 | 454 | 50S ribosomal protein L1 OS=Pseudomonas entomophila (strain L48) GN=rplA PE=3 SV=1 |
7| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ADHP_ECOLI | 447 | Alcohol dehydrogenase, propanol-preferring OS=Escherichia coli (strain K12) GN=adhP PE=1 SV=1 |
8| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | OTCC_PSEPK | 407 | Ornithine carbamoyltransferase, catabolic OS=Pseudomonas putida (strain KT2440) GN=arcB PE=3 SV=3 |
9| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RPOB_PSEPG | 398 | DNA-directed RNA polymerase subunit beta OS=Pseudomonas putida (strain GB-1) GN=rpoB PE=3 SV=1 | |
| 6 | RPOB_CHRSD | 115 | DNA-directed RNA polymerase subunit beta OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rpoB PE=3 SV=1 | |
| 3 | RPOB_SACD2 | 141 | DNA-directed RNA polymerase subunit beta OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=rpoB PE=3 SV=1 | |
| 5 | FTSZ_PSEPK | 123 | Cell division protein ftsZ OS=Pseudomonas putida (strain KT2440) GN=ftsZ PE=3 SV=3 | |
| 2 | RPOC_PSEE4 | 267 | DNA-directed RNA polymerase subunit beta' OS=Pseudomonas entomophila (strain L48) GN=rpoC PE=3 SV=1 | |
| 7 | RPOC_COXBN | 77 | DNA-directed RNA polymerase subunit beta' OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rpoC PE=3 SV=1 | |
| 4 | RPOC_SYNAS | 131 | DNA-directed RNA polymerase subunit beta' OS=Syntrophus aciditrophicus (strain SB) GN=rpoC PE=3 SV=1 | |
10| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | SAHH_PSEP1 | 340 | Adenosylhomocysteinase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ahcY PE=3 SV=1 |
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