MASCOT Search ResultsMASCOT Search Results| User | : | Jennifer |
|---|---|---|
| : | [email protected] | |
| Search title | : | Rita4 sp |
| MS data file | : | PRT1270_T-BRSC_4_20250714120925.mgf |
| Database | : | SwissProt 57.15 (515,203 sequences; 181,334,896 residues) |
| Timestamp | : | 12 Aug 2025 at 23:41:34 GMT |
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| Type of search | : | MS/MS Ion Search |
|---|---|---|
| Enzyme | : | GluC_Trypsin |
| Fixed modifications | : | Carbamidomethyl (C) |
| Variable modifications | : | Deamidated (NQ), Oxidation (M) |
| Mass values | : | Monoisotopic |
| Protein mass | : | Unrestricted |
| Peptide mass tolerance | : | ± 20 ppm |
| Fragment mass tolerance | : | ± 0.1 Da |
| Max missed cleavages | : | 1 |
| Instrument type | : | ESI-FTICR |
| Number of queries | : | 4,786 |
Peptide score distribution. Ions score is −10log(P), where P is the probability that the observed match is a random event. Individual ions scores > 39 indicate identity or extensive homology (p<0.05).
[Deprecated] Score distribution for family members in the first 50 proteins. Protein scores are derived from ions scores as a non-probabilistic basis for ranking protein families.
| Dupes | Expect | Rank | U | 1 | 2 | Peptide | |
|---|---|---|---|---|---|---|---|
| 0.037 |  2 |
GAYSLSLR | significant | ||||
| 9 | 1 |
GFFLFVEGGR | top ranking | ||||
| 6.4e-005 | 1 |
GSSIFGLAPGK | significant and top ranking | ||||
| 1.3e-006 | 1 |
 |
SSGTSYPDVLK | peptide is found in all proteins in family member 1 | |||
| 6.2e-007 | 1 |
 |
VCNYVSWIK | peptide is found in some but not all proteins in family member 2 | |||
| 6.4e-005 | 1 |
U | GSSIFGLAPGK | unique | |||
| 2 |
5.7e-005 | 1 |
LNTLETEEWFFK | peptide has two duplicates | |||
| 0.18 | 1 |
LNTLETEEWFFK | duplicate peptide |
Right-facing triangle () in the Dupes or Rank column indicates content that can be expanded by clicking on it. Down-facing triangle (
) indicates the content is expanded and can be collapsed. For more details about particular columns, see results format help.
11| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | SUCC_PSEPK | 276 | Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas putida (strain KT2440) GN=sucC PE=3 SV=1 |
12| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RS5_PSEE4 | 271 | 30S ribosomal protein S5 OS=Pseudomonas entomophila (strain L48) GN=rpsE PE=3 SV=1 |
13| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RPOA_PSEPK | 263 | DNA-directed RNA polymerase subunit alpha OS=Pseudomonas putida (strain KT2440) GN=rpoA PE=3 SV=1 |
| Score | Mass | Matches | Sequences | emPAI | |||
|---|---|---|---|---|---|---|---|
| 13.1 | RPOA_PSEPK |
263 | 36721 | 20 (12) | 9 (6) | 0.63 | |
| DNA-directed RNA polymerase subunit alpha OS=Pseudomonas putida (strain KT2440) GN=rpoA PE=3 SV=1 | |||||||
| 2 samesets of RPOA_PSEPK | |||||||
| RPOA_PSEP1 |
263 | 36721 | 20 (12) | 9 (6) | 0.63 | ||
| DNA-directed RNA polymerase subunit alpha OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rpoA PE=3 SV=1 | |||||||
| RPOA_PSEE4 |
263 | 36721 | 20 (12) | 9 (6) | 0.63 | ||
| DNA-directed RNA polymerase subunit alpha OS=Pseudomonas entomophila (strain L48) GN=rpoA PE=3 SV=1 | |||||||
20 peptide matches (11 non-duplicate, 9 duplicate)| Score | Mass | Subset of | |||
|---|---|---|---|---|---|
| RPOA_PSE14 |
214 | 36765 | 13.1 | ||
| DNA-directed RNA polymerase subunit alpha OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=rpoA PE=3 SV=1 | |||||
| 6 samesets of RPOA_PSE14 | |||||
| RPOA_PSEPF |
214 | 36723 | |||
| DNA-directed RNA polymerase subunit alpha OS=Pseudomonas fluorescens (strain Pf0-1) GN=rpoA PE=3 SV=1 | |||||
| RPOA_PSEPU |
214 | 36695 | |||
| DNA-directed RNA polymerase subunit alpha OS=Pseudomonas putida GN=rpoA PE=3 SV=1 | |||||
| RPOA_PSESM |
214 | 36765 | |||
| DNA-directed RNA polymerase subunit alpha OS=Pseudomonas syringae pv. tomato GN=rpoA PE=3 SV=1 | |||||
| RPOA_PSEU2 |
214 | 36765 | |||
| DNA-directed RNA polymerase subunit alpha OS=Pseudomonas syringae pv. syringae (strain B728a) GN=rpoA PE=3 SV=1 | |||||
| RPOA_PSEF5 |
214 | 36721 | |||
| DNA-directed RNA polymerase subunit alpha OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rpoA PE=3 SV=1 | |||||
| RPOA_PSEU5 |
214 | 36620 | |||
| DNA-directed RNA polymerase subunit alpha OS=Pseudomonas stutzeri (strain A1501) GN=rpoA PE=3 SV=1 | |||||
| RPOA_PSEA7 |
210 | 36741 | 13.1 | ||
| DNA-directed RNA polymerase subunit alpha OS=Pseudomonas aeruginosa (strain PA7) GN=rpoA PE=3 SV=1 | |||||
| 3 samesets of RPOA_PSEA7 | |||||
| RPOA_PSEAB |
210 | 36741 | |||
| DNA-directed RNA polymerase subunit alpha OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rpoA PE=3 SV=1 | |||||
| RPOA_PSEAE |
210 | 36741 | |||
| DNA-directed RNA polymerase subunit alpha OS=Pseudomonas aeruginosa GN=rpoA PE=3 SV=2 | |||||
| RPOA_PSEMY |
210 | 36661 | |||
| DNA-directed RNA polymerase subunit alpha OS=Pseudomonas mendocina (strain ymp) GN=rpoA PE=3 SV=1 | |||||
| RPOA_SACD2 |
196 | 36391 | 13.1 | ||
| DNA-directed RNA polymerase subunit alpha OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=rpoA PE=3 SV=1 | |||||
| RPOA_AZOSB |
146 | 35767 | 13.1 | ||
| DNA-directed RNA polymerase subunit alpha OS=Azoarcus sp. (strain BH72) GN=rpoA PE=3 SV=1 | |||||
| 5 samesets of RPOA_AZOSB | |||||
| RPOA_CELJU |
146 | 36326 | |||
| DNA-directed RNA polymerase subunit alpha OS=Cellvibrio japonicus (strain Ueda107) GN=rpoA PE=3 SV=1 | |||||
| RPOA_CHRSD |
146 | 37113 | |||
| DNA-directed RNA polymerase subunit alpha OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rpoA PE=3 SV=1 | |||||
| RPOA_THISH |
146 | 36890 | |||
| DNA-directed RNA polymerase subunit alpha OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rpoA PE=3 SV=1 | |||||
| RPOA_AZOSE |
146 | 35666 | |||
| DNA-directed RNA polymerase subunit alpha OS=Azoarcus sp. (strain EbN1) GN=rpoA PE=3 SV=1 | |||||
| RPOA_LEPCP |
146 | 36343 | |||
| DNA-directed RNA polymerase subunit alpha OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=rpoA PE=3 SV=1 | |||||
| RPOA_ACIAC |
138 | 36282 | 13.1 | ||
| DNA-directed RNA polymerase subunit alpha OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=rpoA PE=3 SV=1 | |||||
| 52 samesets of RPOA_ACIAC |
|||||
| RPOA_BLOFL |
45 | 37420 | 13.1 | ||
| DNA-directed RNA polymerase subunit alpha OS=Blochmannia floridanus GN=rpoA PE=3 SV=1 | |||||
| 3 samesets of RPOA_BLOFL | |||||
| RPOA_WIGBR |
45 | 37133 | |||
| DNA-directed RNA polymerase subunit alpha OS=Wigglesworthia glossinidia brevipalpis GN=rpoA PE=3 SV=1 | |||||
| RPOA_BUCBP |
45 | 37453 | |||
| DNA-directed RNA polymerase subunit alpha OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rpoA PE=3 SV=1 | |||||
| RPOA_BUCCC |
45 | 37214 | |||
| DNA-directed RNA polymerase subunit alpha OS=Buchnera aphidicola subsp. Cinara cedri GN=rpoA PE=3 SV=1 | |||||
| RPOA1_PSYIN |
38 | 36427 | 13.1 | ||
| DNA-directed RNA polymerase subunit alpha 1 OS=Psychromonas ingrahamii (strain 37) GN=rpoA1 PE=3 SV=1 | |||||
| 110 samesets of RPOA1_PSYIN |
|||||
14| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ARCA_PSEPK | 261 | Arginine deiminase OS=Pseudomonas putida (strain KT2440) GN=arcA PE=3 SV=1 |
15| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | DHSA_ECOLI | 235 | Succinate dehydrogenase flavoprotein subunit OS=Escherichia coli (strain K12) GN=sdhA PE=1 SV=1 |
16| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ADHP_ECOLI | 222 | Alcohol dehydrogenase, propanol-preferring OS=Escherichia coli (strain K12) GN=adhP PE=1 SV=1 |
17| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RL18_PSEP1 | 217 | 50S ribosomal protein L18 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rplR PE=3 SV=1 |
18| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | EFG1_PSEPK | 213 | Elongation factor G 1 OS=Pseudomonas putida (strain KT2440) GN=fusA PE=3 SV=1 |
19| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ACON2_PSEAE | 201 | Aconitate hydratase 2 OS=Pseudomonas aeruginosa GN=acnB PE=3 SV=1 |
20| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RL11_PSEP1 | 200 | 50S ribosomal protein L11 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rplK PE=3 SV=1 |
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