MASCOT Search ResultsMASCOT Search Results| User | : | Jennifer |
|---|---|---|
| : | [email protected] | |
| Search title | : | Rita2 sp |
| MS data file | : | PRT1270_T-BRSC_2_20250714115216.mgf |
| Database | : | SwissProt 57.15 (515,203 sequences; 181,334,896 residues) |
| Timestamp | : | 12 Aug 2025 at 23:39:15 GMT |
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| Type of search | : | MS/MS Ion Search |
|---|---|---|
| Enzyme | : | GluC_Trypsin |
| Fixed modifications | : | Carbamidomethyl (C) |
| Variable modifications | : | Deamidated (NQ), Oxidation (M) |
| Mass values | : | Monoisotopic |
| Protein mass | : | Unrestricted |
| Peptide mass tolerance | : | ± 20 ppm |
| Fragment mass tolerance | : | ± 0.1 Da |
| Max missed cleavages | : | 1 |
| Instrument type | : | ESI-FTICR |
| Number of queries | : | 4,778 |
Peptide score distribution. Ions score is −10log(P), where P is the probability that the observed match is a random event. Individual ions scores > 39 indicate identity or extensive homology (p<0.05).
[Deprecated] Score distribution for family members in the first 50 proteins. Protein scores are derived from ions scores as a non-probabilistic basis for ranking protein families.
| Dupes | Expect | Rank | U | 1 | 2 | Peptide | |
|---|---|---|---|---|---|---|---|
| 0.037 |  2 |
GAYSLSLR | significant | ||||
| 9 | 1 |
GFFLFVEGGR | top ranking | ||||
| 6.4e-005 | 1 |
GSSIFGLAPGK | significant and top ranking | ||||
| 1.3e-006 | 1 |
 |
SSGTSYPDVLK | peptide is found in all proteins in family member 1 | |||
| 6.2e-007 | 1 |
 |
VCNYVSWIK | peptide is found in some but not all proteins in family member 2 | |||
| 6.4e-005 | 1 |
U | GSSIFGLAPGK | unique | |||
| 2 |
5.7e-005 | 1 |
LNTLETEEWFFK | peptide has two duplicates | |||
| 0.18 | 1 |
LNTLETEEWFFK | duplicate peptide |
Right-facing triangle () in the Dupes or Rank column indicates content that can be expanded by clicking on it. Down-facing triangle (
) indicates the content is expanded and can be collapsed. For more details about particular columns, see results format help.
81| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | CLPX_PSEMY | 66 | ATP-dependent Clp protease ATP-binding subunit clpX OS=Pseudomonas mendocina (strain ymp) GN=clpX PE=3 SV=1 |
| Score | Mass | Matches | Sequences | emPAI | |||
|---|---|---|---|---|---|---|---|
| 81.1 | CLPX_PSEMY |
66 | 47098 | 7 (1) | 5 (1) | 0.05 | |
| ATP-dependent Clp protease ATP-binding subunit clpX OS=Pseudomonas mendocina (strain ymp) GN=clpX PE=3 SV=1 | |||||||
| 627 samesets of CLPX_PSEMY |
|||||||
7 peptide matches (6 non-duplicate, 1 duplicate)| Query | Dupes | Observed | Mr(expt) | Mr(calc) | ppm | M | Score | Expect | Rank | U | Peptide |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1204 |
494.2982 | 986.5818 | 986.5760 | 5.91 | 1 | 36 | 0.068 | 1Score > 39 indicates identity Score > 37 indicates homology |
U | K.TLLAETLAR.L | |
| 1532 |
1 |
567.8247 | 1133.6348 | 1133.6233 | 10.2 | 1 | 20 | 0.7 | 1Score > 38 indicates identity Score > 31 indicates homology |
K.FGLIPEFVGR.L | |
| 1634 |
394.9010 | 1181.6812 | 1181.7019 | -17.6 | 0 | 5 | 2 | 4Score > 36 indicates identity Score > 21 indicates homology |
U | E.AALVQILTEPK.N | |
| 1797 |
628.8694 | 1255.7242 | 1255.7136 | 8.49 | 0 | 35 | 0.052 | 1Score > 38 indicates identity Score > 35 indicates homology |
U | K.SNILLIGPTGSGK.T | |
| 1973 |
672.3651 | 1342.7156 | 1342.7092 | 4.77 | 1 | 66 | 3.4e-005 | 1Score > 40 indicates identity Score > 34 indicates homology |
U | R.DVSGEGVQQALLK.L | |
| 1977 |
672.8505 | 1343.6864 | 1343.6933 | -5.06 | 1 | 14 | 2.7 | 7Score > 41 indicates identity Score > 30 indicates homology |
U | R.DVSGEGVQQALLK.L + Deamidated (NQ) |
82| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RS15_PSEPG | 65 | 30S ribosomal protein S15 OS=Pseudomonas putida (strain GB-1) GN=rpsO PE=3 SV=1 |
83| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ATPE_PSEPG | 62 | ATP synthase epsilon chain OS=Pseudomonas putida (strain GB-1) GN=atpC PE=3 SV=1 |
84| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ARPC_PSEPU | 62 | Antibiotic efflux pump outer membrane protein arpC OS=Pseudomonas putida GN=arpC PE=2 SV=1 |
85| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RS18_PSEE4 | 62 | 30S ribosomal protein S18 OS=Pseudomonas entomophila (strain L48) GN=rpsR PE=3 SV=1 |
86| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RS4_PSEP1 | 60 | 30S ribosomal protein S4 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rpsD PE=3 SV=1 |
87| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | FLAE_VIBCH | 59 | Flagellin E OS=Vibrio cholerae GN=flaE PE=3 SV=1 |
88| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | CYOB_PSEPU | 56 | Ubiquinol oxidase subunit 1 OS=Pseudomonas putida GN=cyoB PE=3 SV=1 |
89| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RL23_PSEE4 | 56 | 50S ribosomal protein L23 OS=Pseudomonas entomophila (strain L48) GN=rplW PE=3 SV=1 |
90| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | EFTS_PSEPK | 55 | Elongation factor Ts OS=Pseudomonas putida (strain KT2440) GN=tsf PE=3 SV=1 |
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