MASCOT Search Results

Search metadata
User : Jennifer
E-mail : [email protected]
Search title : Rita2 sp
MS data file : PRT1270_T-BRSC_2_20250714115216.mgf
Database : SwissProt 57.15 (515,203 sequences; 181,334,896 residues)
Timestamp : 12 Aug 2025 at 23:39:15 GMT
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Search parameters
Type of search : MS/MS Ion Search
Enzyme : GluC_Trypsin
Fixed modifications : Carbamidomethyl (C)
Variable modifications : Deamidated (NQ), Oxidation (M)
Mass values : Monoisotopic
Protein mass : Unrestricted
Peptide mass tolerance : ± 20 ppm
Fragment mass tolerance : ± 0.1 Da
Max missed cleavages : 1
Instrument type : ESI-FTICR
Number of queries : 4,778

Score distribution

Peptide score distribution

Peptide score distribution. Ions score is −10log(P), where P is the probability that the observed match is a random event. Individual ions scores > 39 indicate identity or extensive homology (p<0.05).

Protein score distribution for the first 50 proteins

[Deprecated] Score distribution for family members in the first 50 proteins. Protein scores are derived from ions scores as a non-probabilistic basis for ranking protein families.

Legend
Dupes Expect Rank U 1 2 Peptide
0.037 +2 GAYSLSLR significant
9 +1 GFFLFVEGGR top ranking
6.4e-005 +1 GSSIFGLAPGK significant and top ranking
1.3e-006 +1 X SSGTSYPDVLK peptide is found in all proteins in family member 1
6.2e-007 +1 / VCNYVSWIK peptide is found in some but not all proteins in family member 2
6.4e-005 +1 U GSSIFGLAPGK unique
+2 5.7e-005 +1 LNTLETEEWFFK peptide has two duplicates
0.18 +1 LNTLETEEWFFK duplicate peptide

Right-facing triangle (+) in the Dupes or Rank column indicates content that can be expanded by clicking on it. Down-facing triangle (-) indicates the content is expanded and can be collapsed. For more details about particular columns, see results format help.

Protein Family Summary

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Protein families 1–10 (out of 179)

Page: 1 2 3 4 5 6 … 18 Next 

+1

Accession Score Description
Family member distances as a dendrogram 1 EFTU2_PSEPK 1121 Elongation factor Tu-B OS=Pseudomonas putida (strain KT2440) GN=tufB PE=3 SV=1
6 EFTU_CYAP7 40 Elongation factor Tu OS=Cyanothece sp. (strain PCC 7424) GN=tuf PE=3 SV=1
5 EFTU_ANATD 50 Elongation factor Tu OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=tuf PE=3 SV=1
3 EFTU_PSEFS 701 Elongation factor Tu OS=Pseudomonas fluorescens (strain SBW25) GN=tuf PE=3 SV=1
2 EFTU1_PSEPK 1002 Elongation factor Tu-A OS=Pseudomonas putida (strain KT2440) GN=tufA PE=3 SV=1
4 EFTU_CARRP 145 Elongation factor Tu OS=Carsonella ruddii (strain PV) GN=tuf PE=3 SV=1

+2

Accession Score Description
1 ATPB_PSEPG 972 ATP synthase subunit beta OS=Pseudomonas putida (strain GB-1) GN=atpD PE=3 SV=1

+3

Accession Score Description
Family member distances as a dendrogram 1 ATPA_PSEPK 749 ATP synthase subunit alpha OS=Pseudomonas putida (strain KT2440) GN=atpA PE=3 SV=1
2 ATPA_RICAH 179 ATP synthase subunit alpha OS=Rickettsia akari (strain Hartford) GN=atpA PE=3 SV=1
3 ATPA_VEREI 174 ATP synthase subunit alpha OS=Verminephrobacter eiseniae (strain EF01-2) GN=atpA PE=3 SV=1

+4

Accession Score Description
Family member distances as a dendrogram 1 CH60_PSEPK 584 60 kDa chaperonin OS=Pseudomonas putida (strain KT2440) GN=groL PE=3 SV=1
3 CH602_SORC5 80 60 kDa chaperonin 2 OS=Sorangium cellulosum (strain So ce56) GN=groL2 PE=3 SV=1
2 CH601_ECOK1 123 60 kDa chaperonin 1 OS=Escherichia coli O1:K1 / APEC GN=groL1 PE=3 SV=1

+5

Accession Score Description
1 DLDH2_PSEPU 541 Dihydrolipoamide dehydrogenase OS=Pseudomonas putida GN=lpdG PE=1 SV=4

-6

Accession Score Description
1 RL1_PSEE4 419 50S ribosomal protein L1 OS=Pseudomonas entomophila (strain L48) GN=rplA PE=3 SV=1
Score Mass Matches Sequences emPAI
6.1 RL1_PSEE4 419 24208 13 (10) 6 (4) 0.73
50S ribosomal protein L1 OS=Pseudomonas entomophila (strain L48) GN=rplA PE=3 SV=1
2 samesets of RL1_PSEE4
RL1_PSEP1 419 24236 13 (10) 6 (4) 0.73
50S ribosomal protein L1 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rplA PE=3 SV=1
RL1_PSEPK 419 24236 13 (10) 6 (4) 0.73
50S ribosomal protein L1 OS=Pseudomonas putida (strain KT2440) GN=rplA PE=3 SV=1

+13 peptide matches (9 non-duplicate, 4 duplicate)

8 subsets and intersections (117 subset proteins in total)

Score Mass Subset of
RL1_PSEPW 394 24112 6.1
50S ribosomal protein L1 OS=Pseudomonas putida (strain W619) GN=rplA PE=3 SV=1
1 sameset of RL1_PSEPW
RL1_PSESM 394 24163
50S ribosomal protein L1 OS=Pseudomonas syringae pv. tomato GN=rplA PE=3 SV=1
RL1_PSEPG 388 24180 6.1
50S ribosomal protein L1 OS=Pseudomonas putida (strain GB-1) GN=rplA PE=3 SV=1
RL1_PSE14 363 24120 6.1
50S ribosomal protein L1 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=rplA PE=3 SV=1
2 samesets of RL1_PSE14
RL1_PSEF5 363 24047
50S ribosomal protein L1 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rplA PE=3 SV=1
RL1_PSEU2 363 24176
50S ribosomal protein L1 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=rplA PE=3 SV=1
RL1_PSEFS 309 24061 6.1
50S ribosomal protein L1 OS=Pseudomonas fluorescens (strain SBW25) GN=rplA PE=3 SV=1
1 sameset of RL1_PSEFS
RL1_PSEPF 309 24193
50S ribosomal protein L1 OS=Pseudomonas fluorescens (strain Pf0-1) GN=rplA PE=3 SV=1
RL1_AZOVD 277 24230 6.1
50S ribosomal protein L1 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=rplA PE=3 SV=1
RL1_PSEMY 145 23957 6.1
50S ribosomal protein L1 OS=Pseudomonas mendocina (strain ymp) GN=rplA PE=3 SV=1
1 sameset of RL1_PSEMY
RL1_PSEU5 145 24129
50S ribosomal protein L1 OS=Pseudomonas stutzeri (strain A1501) GN=rplA PE=3 SV=1
RL1_ACTP2 112 23932 6.1
50S ribosomal protein L1 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rplA PE=3 SV=1
-58 samesets of RL1_ACTP2
RL1_ACTP7 112 23932
50S ribosomal protein L1 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rplA PE=3 SV=1
RL1_ACTPJ 112 24005
50S ribosomal protein L1 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rplA PE=3 SV=1
RL1_CELJU 112 24196
50S ribosomal protein L1 OS=Cellvibrio japonicus (strain Ueda107) GN=rplA PE=3 SV=1
RL1_CITK8 112 24859
50S ribosomal protein L1 OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=rplA PE=3 SV=1
RL1_ECO24 112 24714
50S ribosomal protein L1 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rplA PE=3 SV=1
RL1_ECO27 112 24728
50S ribosomal protein L1 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rplA PE=3 SV=1
RL1_ECO45 112 24714
50S ribosomal protein L1 OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rplA PE=3 SV=1
RL1_ECO55 112 24714
50S ribosomal protein L1 OS=Escherichia coli (strain 55989 / EAEC) GN=rplA PE=3 SV=1
RL1_ECO57 112 24714
50S ribosomal protein L1 OS=Escherichia coli O157:H7 GN=rplA PE=3 SV=2
RL1_ECO5E 112 24714
50S ribosomal protein L1 OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rplA PE=3 SV=1
RL1_ECO7I 112 24714
50S ribosomal protein L1 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rplA PE=3 SV=1
RL1_ECO81 112 24714
50S ribosomal protein L1 OS=Escherichia coli O81 (strain ED1a) GN=rplA PE=3 SV=1
RL1_ECO8A 112 24714
50S ribosomal protein L1 OS=Escherichia coli O8 (strain IAI1) GN=rplA PE=3 SV=1
RL1_ECOBW 112 24714
50S ribosomal protein L1 OS=Escherichia coli (strain K12 / BW2952) GN=rplA PE=3 SV=1
RL1_ECODH 112 24714
50S ribosomal protein L1 OS=Escherichia coli (strain K12 / DH10B) GN=rplA PE=3 SV=1
RL1_ECOHS 112 24714
50S ribosomal protein L1 OS=Escherichia coli O9:H4 (strain HS) GN=rplA PE=3 SV=1
RL1_ECOL5 112 24714
50S ribosomal protein L1 OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rplA PE=3 SV=1
RL1_ECOL6 112 24714
50S ribosomal protein L1 OS=Escherichia coli O6 GN=rplA PE=3 SV=2
RL1_ECOLC 112 24714
50S ribosomal protein L1 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rplA PE=3 SV=1
RL1_ECOLI 112 24714
50S ribosomal protein L1 OS=Escherichia coli (strain K12) GN=rplA PE=1 SV=2
RL1_ECOLU 112 24714
50S ribosomal protein L1 OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rplA PE=3 SV=1
RL1_ECOSE 112 24714
50S ribosomal protein L1 OS=Escherichia coli (strain SE11) GN=rplA PE=3 SV=1
RL1_ECOSM 112 24714
50S ribosomal protein L1 OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rplA PE=3 SV=1
RL1_ECOUT 112 24714
50S ribosomal protein L1 OS=Escherichia coli (strain UTI89 / UPEC) GN=rplA PE=3 SV=1
RL1_ENT38 112 24637
50S ribosomal protein L1 OS=Enterobacter sp. (strain 638) GN=rplA PE=3 SV=1
RL1_ENTS8 112 24687
50S ribosomal protein L1 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rplA PE=3 SV=1
RL1_ERWT9 112 24644
50S ribosomal protein L1 OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=rplA PE=3 SV=1
RL1_ESCF3 112 24714
50S ribosomal protein L1 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rplA PE=3 SV=1
RL1_HAEDU 112 24067
50S ribosomal protein L1 OS=Haemophilus ducreyi GN=rplA PE=3 SV=2
RL1_HAEI8 112 24092
50S ribosomal protein L1 OS=Haemophilus influenzae (strain 86-028NP) GN=rplA PE=3 SV=1
RL1_HAEIE 112 24120
50S ribosomal protein L1 OS=Haemophilus influenzae (strain PittEE) GN=rplA PE=3 SV=1
RL1_HAEIG 112 24092
50S ribosomal protein L1 OS=Haemophilus influenzae (strain PittGG) GN=rplA PE=3 SV=1
RL1_HAEIN 112 24092
50S ribosomal protein L1 OS=Haemophilus influenzae GN=rplA PE=3 SV=2
RL1_HAEPS 112 23962
50S ribosomal protein L1 OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=rplA PE=3 SV=1
RL1_KLEP3 112 24616
50S ribosomal protein L1 OS=Klebsiella pneumoniae (strain 342) GN=rplA PE=3 SV=1
RL1_KLEP7 112 24729
50S ribosomal protein L1 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rplA PE=3 SV=1
RL1_MANSM 112 23931
50S ribosomal protein L1 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rplA PE=3 SV=1
RL1_PECCP 112 24691
50S ribosomal protein L1 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplA PE=3 SV=1
RL1_SALA4 112 24713
50S ribosomal protein L1 OS=Salmonella agona (strain SL483) GN=rplA PE=3 SV=1
RL1_SALAR 112 24702
50S ribosomal protein L1 OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=rplA PE=3 SV=1
RL1_SALCH 112 24713
50S ribosomal protein L1 OS=Salmonella choleraesuis GN=rplA PE=3 SV=1
RL1_SALDC 112 24713
50S ribosomal protein L1 OS=Salmonella dublin (strain CT_02021853) GN=rplA PE=3 SV=1
RL1_SALEP 112 24713
50S ribosomal protein L1 OS=Salmonella enteritidis PT4 (strain P125109) GN=rplA PE=3 SV=1
RL1_SALHS 112 24713
50S ribosomal protein L1 OS=Salmonella heidelberg (strain SL476) GN=rplA PE=3 SV=1
RL1_SALNS 112 24713
50S ribosomal protein L1 OS=Salmonella newport (strain SL254) GN=rplA PE=3 SV=1
RL1_SALPA 112 24713
50S ribosomal protein L1 OS=Salmonella paratyphi A GN=rplA PE=3 SV=1
RL1_SALPB 112 24713
50S ribosomal protein L1 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rplA PE=3 SV=1
RL1_SALPC 112 24713
50S ribosomal protein L1 OS=Salmonella paratyphi C (strain RKS4594) GN=rplA PE=3 SV=1
RL1_SALPK 112 24713
50S ribosomal protein L1 OS=Salmonella paratyphi A (strain AKU_12601) GN=rplA PE=3 SV=1
RL1_SALSV 112 24713
50S ribosomal protein L1 OS=Salmonella schwarzengrund (strain CVM19633) GN=rplA PE=3 SV=1
RL1_SALTI 112 24713
50S ribosomal protein L1 OS=Salmonella typhi GN=rplA PE=3 SV=1
RL1_SALTY 112 24713
50S ribosomal protein L1 OS=Salmonella typhimurium GN=rplA PE=3 SV=1
RL1_SHIB3 112 24714
50S ribosomal protein L1 OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rplA PE=3 SV=1
RL1_SHIBS 112 24714
50S ribosomal protein L1 OS=Shigella boydii serotype 4 (strain Sb227) GN=rplA PE=3 SV=1
RL1_SHIDS 112 24714
50S ribosomal protein L1 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rplA PE=3 SV=1
RL1_SHIF8 112 24714
50S ribosomal protein L1 OS=Shigella flexneri serotype 5b (strain 8401) GN=rplA PE=3 SV=1
RL1_SHIFL 112 24714
50S ribosomal protein L1 OS=Shigella flexneri GN=rplA PE=3 SV=2
RL1_SHISS 112 24714
50S ribosomal protein L1 OS=Shigella sonnei (strain Ss046) GN=rplA PE=3 SV=1
RL1_ACIAC 65 23909 6.1
50S ribosomal protein L1 OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=rplA PE=3 SV=1
+46 samesets of RL1_ACIAC

+7

Accession Score Description
1 EFG1_PSEPK 337 Elongation factor G 1 OS=Pseudomonas putida (strain KT2440) GN=fusA PE=3 SV=1

+8

Accession Score Description
1 RS5_PSEE4 331 30S ribosomal protein S5 OS=Pseudomonas entomophila (strain L48) GN=rpsE PE=3 SV=1

+9

Accession Score Description
Family member distances as a dendrogram 1 RL4_PSE14 327 50S ribosomal protein L4 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=rplD PE=3 SV=1
2 RL4_PSEE4 318 50S ribosomal protein L4 OS=Pseudomonas entomophila (strain L48) GN=rplD PE=3 SV=1

+10

Accession Score Description
1 RL18_PSEP1 310 50S ribosomal protein L18 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rplR PE=3 SV=1
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