MASCOT Search ResultsMASCOT Search Results| User | : | Jennifer |
|---|---|---|
| : | [email protected] | |
| Search title | : | Rita1 sp |
| MS data file | : | PRT1270_T-BRSC_1_20250714114344.mgf |
| Database | : | SwissProt 57.15 (515,203 sequences; 181,334,896 residues) |
| Timestamp | : | 12 Aug 2025 at 22:50:29 GMT |
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| Type of search | : | MS/MS Ion Search |
|---|---|---|
| Enzyme | : | GluC_Trypsin |
| Fixed modifications | : | Carbamidomethyl (C) |
| Variable modifications | : | Deamidated (NQ), Oxidation (M) |
| Mass values | : | Monoisotopic |
| Protein mass | : | Unrestricted |
| Peptide mass tolerance | : | ± 20 ppm |
| Fragment mass tolerance | : | ± 0.1 Da |
| Max missed cleavages | : | 1 |
| Instrument type | : | ESI-FTICR |
| Number of queries | : | 4,938 |
Peptide score distribution. Ions score is −10log(P), where P is the probability that the observed match is a random event. Individual ions scores > 39 indicate identity or extensive homology (p<0.05).
[Deprecated] Score distribution for family members in the first 50 proteins. Protein scores are derived from ions scores as a non-probabilistic basis for ranking protein families.
| Dupes | Expect | Rank | U | 1 | 2 | Peptide | |
|---|---|---|---|---|---|---|---|
| 0.037 |  2 |
GAYSLSLR | significant | ||||
| 9 | 1 |
GFFLFVEGGR | top ranking | ||||
| 6.4e-005 | 1 |
GSSIFGLAPGK | significant and top ranking | ||||
| 1.3e-006 | 1 |
 |
SSGTSYPDVLK | peptide is found in all proteins in family member 1 | |||
| 6.2e-007 | 1 |
 |
VCNYVSWIK | peptide is found in some but not all proteins in family member 2 | |||
| 6.4e-005 | 1 |
U | GSSIFGLAPGK | unique | |||
| 2 |
5.7e-005 | 1 |
LNTLETEEWFFK | peptide has two duplicates | |||
| 0.18 | 1 |
LNTLETEEWFFK | duplicate peptide |
Right-facing triangle () in the Dupes or Rank column indicates content that can be expanded by clicking on it. Down-facing triangle (
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41| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RS4_PSEP1 | 144 | 30S ribosomal protein S4 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rpsD PE=3 SV=1 |
42| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | IF2_PSEE4 | 143 | Translation initiation factor IF-2 OS=Pseudomonas entomophila (strain L48) GN=infB PE=3 SV=1 |
43| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RL20_PSEE4 | 140 | 50S ribosomal protein L20 OS=Pseudomonas entomophila (strain L48) GN=rplT PE=3 SV=1 | |
| 2 | RL20_POLNS | 61 | 50S ribosomal protein L20 OS=Polynucleobacter necessarius (strain STIR1) GN=rplT PE=3 SV=1 | |
44| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ODO2_PSEPU | 132 | Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex (Fragment) OS=Pseudomonas putida GN=sucB PE=3 SV=2 |
45| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RL13_PSEP1 | 132 | 50S ribosomal protein L13 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rplM PE=3 SV=1 |
| Score | Mass | Matches | Sequences | emPAI | |||
|---|---|---|---|---|---|---|---|
| 45.1 | RL13_PSEP1 |
132 | 15852 | 11 (7) | 7 (4) | 1.00 | |
| 50S ribosomal protein L13 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rplM PE=3 SV=1 | |||||||
| 2 samesets of RL13_PSEP1 | |||||||
| RL13_PSEPG |
132 | 15852 | 11 (7) | 7 (4) | 1.00 | ||
| 50S ribosomal protein L13 OS=Pseudomonas putida (strain GB-1) GN=rplM PE=3 SV=1 | |||||||
| RL13_PSEPK |
132 | 15852 | 11 (7) | 7 (4) | 1.00 | ||
| 50S ribosomal protein L13 OS=Pseudomonas putida (strain KT2440) GN=rplM PE=3 SV=1 | |||||||
11 peptide matches (8 non-duplicate, 3 duplicate)| Query | Dupes | Observed | Mr(expt) | Mr(calc) | ppm | M | Score | Expect | Rank | U | Peptide |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 257 |
556.3223 | 555.3150 | 555.3129 | 3.86 | 0 | 24 | 0.35 | 1Score > 35 indicates identity Score > 32 indicates homology |
K.NPLGR.D | ||
| 375 |
326.1716 | 650.3286 | 650.3275 | 1.74 | 1 | 9 | 7.9 | 9Score > 43 indicates identity Score > 31 indicates homology |
E.INFEK.L + Deamidated (NQ) | ||
| 586 |
759.4636 | 758.4563 | 758.4538 | 3.33 | 1 | 44 | 0.024 | 1Score > 40 indicates identity |
U | R.VIETAVK.G | |
| 850 |
874.5008 | 873.4935 | 873.4920 | 1.79 | 1 | 53 | 0.004 | 1Score > 42 indicates identity |
U | R.LATEIATR.L | |
| 852 |
1 |
437.7545 | 873.4944 | 873.4920 | 2.85 | 1 | 42 | 0.05 | 1Score > 42 indicates identity |
U | R.LATEIATR.L |
| 1400 |
374.5459 | 1120.6159 | 1120.6128 | 2.72 | 1 | 22 | 0.15 | 1Score > 39 indicates identity Score > 27 indicates homology |
K.TFTAKPETVK.R | ||
| 2284 |
2 |
774.8990 | 1547.7834 | 1547.7733 | 6.59 | 1 | 64 | 4.6e-005 | 1Score > 41 indicates identity Score > 33 indicates homology |
U | R.EWFVVDAAGQTLGR.L |
| 3072 |
487.5048 | 1945.9901 | 1945.9646 | 13.1 | 1 | 28 | 0.005 | 1Score > 39 indicates identity Score > 17 indicates homology |
U | K.VYAGAAHPHTAQQPQELK.I + Deamidated (NQ) |
| Score | Mass | Subset of | |||
|---|---|---|---|---|---|
| RL13_PSEE4 |
118 | 15838 | 45.1 | ||
| 50S ribosomal protein L13 OS=Pseudomonas entomophila (strain L48) GN=rplM PE=3 SV=1 | |||||
| 1 sameset of RL13_PSEE4 | |||||
| RL13_PSEPW |
118 | 15852 | |||
| 50S ribosomal protein L13 OS=Pseudomonas putida (strain W619) GN=rplM PE=3 SV=1 | |||||
| RL13_COLP3 |
53 | 15993 | 45.1 | ||
| 50S ribosomal protein L13 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rplM PE=3 SV=1 | |||||
| 8 samesets of RL13_COLP3 | |||||
| RL13_PSYA2 |
53 | 15834 | |||
| 50S ribosomal protein L13 OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rplM PE=3 SV=1 | |||||
| RL13_PSYCK |
53 | 15701 | |||
| 50S ribosomal protein L13 OS=Psychrobacter cryohalolentis (strain K5) GN=rplM PE=3 SV=1 | |||||
| RL13_SHEB2 |
53 | 15728 | |||
| 50S ribosomal protein L13 OS=Shewanella baltica (strain OS223) GN=rplM PE=3 SV=1 | |||||
| RL13_SHEB5 |
53 | 15728 | |||
| 50S ribosomal protein L13 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=rplM PE=3 SV=1 | |||||
| RL13_SHEB9 |
53 | 15728 | |||
| 50S ribosomal protein L13 OS=Shewanella baltica (strain OS195) GN=rplM PE=3 SV=1 | |||||
| RL13_SHEFN |
53 | 15736 | |||
| 50S ribosomal protein L13 OS=Shewanella frigidimarina (strain NCIMB 400) GN=rplM PE=3 SV=1 | |||||
| RL13_SHEPC |
53 | 15721 | |||
| 50S ribosomal protein L13 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=rplM PE=3 SV=1 | |||||
| RL13_SHESW |
53 | 15721 | |||
| 50S ribosomal protein L13 OS=Shewanella sp. (strain W3-18-1) GN=rplM PE=3 SV=1 | |||||
| RL13_AZOVD |
44 | 15838 | 45.1 | ||
| 50S ribosomal protein L13 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=rplM PE=3 SV=1 | |||||
| 11 samesets of RL13_AZOVD | |||||
| RL13_PSEMY |
44 | 15890 | |||
| 50S ribosomal protein L13 OS=Pseudomonas mendocina (strain ymp) GN=rplM PE=3 SV=1 | |||||
| RL13_PSE14 |
44 | 15868 | |||
| 50S ribosomal protein L13 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=rplM PE=3 SV=1 | |||||
| RL13_PSESM |
44 | 15853 | |||
| 50S ribosomal protein L13 OS=Pseudomonas syringae pv. tomato GN=rplM PE=3 SV=1 | |||||
| RL13_PSEU2 |
44 | 15868 | |||
| 50S ribosomal protein L13 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=rplM PE=3 SV=1 | |||||
| RL13_PSEU5 |
44 | 15896 | |||
| 50S ribosomal protein L13 OS=Pseudomonas stutzeri (strain A1501) GN=rplM PE=3 SV=1 | |||||
| RL13_HAHCH |
44 | 16147 | |||
| 50S ribosomal protein L13 OS=Hahella chejuensis (strain KCTC 2396) GN=rplM PE=3 SV=1 | |||||
| RL13_PSEA7 |
44 | 16046 | |||
| 50S ribosomal protein L13 OS=Pseudomonas aeruginosa (strain PA7) GN=rplM PE=3 SV=1 | |||||
| RL13_PSEA8 |
44 | 16018 | |||
| 50S ribosomal protein L13 OS=Pseudomonas aeruginosa (strain LESB58) GN=rplM PE=3 SV=1 | |||||
| RL13_PSEAB |
44 | 16018 | |||
| 50S ribosomal protein L13 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rplM PE=3 SV=1 | |||||
| RL13_PSEAE |
44 | 16018 | |||
| 50S ribosomal protein L13 OS=Pseudomonas aeruginosa GN=rplM PE=3 SV=1 | |||||
| RL13_STRM5 |
44 | 16204 | |||
| 50S ribosomal protein L13 OS=Stenotrophomonas maltophilia (strain R551-3) GN=rplM PE=3 SV=1 | |||||
| RL13_PSEF5 |
43 | 15810 | 45.1 | ||
| 50S ribosomal protein L13 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rplM PE=3 SV=1 | |||||
| 1 sameset of RL13_PSEF5 | |||||
| RL13_PSEPF |
43 | 15824 | |||
| 50S ribosomal protein L13 OS=Pseudomonas fluorescens (strain Pf0-1) GN=rplM PE=3 SV=1 | |||||
46| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | EXBB_PSEPU | 129 | Biopolymer transport protein exbB OS=Pseudomonas putida GN=exbB PE=3 SV=1 |
47| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | PCXB_PSEPU | 126 | Protocatechuate 3,4-dioxygenase beta chain OS=Pseudomonas putida GN=pcaH PE=1 SV=3 |
48| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | AMPA_PSEPG | 123 | Probable cytosol aminopeptidase OS=Pseudomonas putida (strain GB-1) GN=pepA PE=3 SV=1 |
49| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | METN1_PSEPK | 122 | Methionine import ATP-binding protein metN 1 OS=Pseudomonas putida (strain KT2440) GN=metN1 PE=3 SV=1 |
50| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ACON2_PSEAE | 113 | Aconitate hydratase 2 OS=Pseudomonas aeruginosa GN=acnB PE=3 SV=1 |
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