MASCOT Search ResultsMASCOT Search Results| User | : | Jennifer |
|---|---|---|
| : | [email protected] | |
| Search title | : | Rita1 sp |
| MS data file | : | PRT1270_T-BRSC_1_20250714114344.mgf |
| Database | : | SwissProt 57.15 (515,203 sequences; 181,334,896 residues) |
| Timestamp | : | 12 Aug 2025 at 22:50:29 GMT |
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| Type of search | : | MS/MS Ion Search |
|---|---|---|
| Enzyme | : | GluC_Trypsin |
| Fixed modifications | : | Carbamidomethyl (C) |
| Variable modifications | : | Deamidated (NQ), Oxidation (M) |
| Mass values | : | Monoisotopic |
| Protein mass | : | Unrestricted |
| Peptide mass tolerance | : | ± 20 ppm |
| Fragment mass tolerance | : | ± 0.1 Da |
| Max missed cleavages | : | 1 |
| Instrument type | : | ESI-FTICR |
| Number of queries | : | 4,938 |
Peptide score distribution. Ions score is −10log(P), where P is the probability that the observed match is a random event. Individual ions scores > 39 indicate identity or extensive homology (p<0.05).
[Deprecated] Score distribution for family members in the first 50 proteins. Protein scores are derived from ions scores as a non-probabilistic basis for ranking protein families.
| Dupes | Expect | Rank | U | 1 | 2 | Peptide | |
|---|---|---|---|---|---|---|---|
| 0.037 |  2 |
GAYSLSLR | significant | ||||
| 9 | 1 |
GFFLFVEGGR | top ranking | ||||
| 6.4e-005 | 1 |
GSSIFGLAPGK | significant and top ranking | ||||
| 1.3e-006 | 1 |
 |
SSGTSYPDVLK | peptide is found in all proteins in family member 1 | |||
| 6.2e-007 | 1 |
 |
VCNYVSWIK | peptide is found in some but not all proteins in family member 2 | |||
| 6.4e-005 | 1 |
U | GSSIFGLAPGK | unique | |||
| 2 |
5.7e-005 | 1 |
LNTLETEEWFFK | peptide has two duplicates | |||
| 0.18 | 1 |
LNTLETEEWFFK | duplicate peptide |
Right-facing triangle () in the Dupes or Rank column indicates content that can be expanded by clicking on it. Down-facing triangle (
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11| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ODB2_PSEPU | 324 | Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex OS=Pseudomonas putida GN=bkdB PE=3 SV=1 |
12| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | DHSA_ECOLI | 318 | Succinate dehydrogenase flavoprotein subunit OS=Escherichia coli (strain K12) GN=sdhA PE=1 SV=1 |
13| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RL4_PSEE4 | 298 | 50S ribosomal protein L4 OS=Pseudomonas entomophila (strain L48) GN=rplD PE=3 SV=1 | |
| 2 | RL4_PSE14 | 297 | 50S ribosomal protein L4 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=rplD PE=3 SV=1 | |
14| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | CH60_PSEPK | 297 | 60 kDa chaperonin OS=Pseudomonas putida (strain KT2440) GN=groL PE=3 SV=1 | |
| 2 | CH601_ECOK1 | 101 | 60 kDa chaperonin 1 OS=Escherichia coli O1:K1 / APEC GN=groL1 PE=3 SV=1 | |
| 3 | CH60_GEOLS | 90 | 60 kDa chaperonin OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=groL PE=3 SV=1 | |
15| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RS2_PSEP1 | 297 | 30S ribosomal protein S2 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rpsB PE=3 SV=1 |
16| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ODO2_PSEAE | 292 | Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Pseudomonas aeruginosa GN=sucB PE=3 SV=1 |
17| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | SUCC_PSEPK | 257 | Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas putida (strain KT2440) GN=sucC PE=3 SV=1 |
18| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | EFG1_PSEPK | 240 | Elongation factor G 1 OS=Pseudomonas putida (strain KT2440) GN=fusA PE=3 SV=1 |
19| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ARPA_PSEPU | 230 | Antibiotic efflux pump periplasmic linker protein arpA OS=Pseudomonas putida GN=arpA PE=2 SV=1 |
20| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RL18_PSEP1 | 226 | 50S ribosomal protein L18 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rplR PE=3 SV=1 |
| Score | Mass | Matches | Sequences | emPAI | |||
|---|---|---|---|---|---|---|---|
| 20.1 | RL18_PSEP1 |
226 | 12677 | 7 (5) | 5 (4) | 1.38 | |
| 50S ribosomal protein L18 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rplR PE=3 SV=1 | |||||||
| 3 samesets of RL18_PSEP1 | |||||||
| RL18_PSEPG |
226 | 12677 | 7 (5) | 5 (4) | 1.38 | ||
| 50S ribosomal protein L18 OS=Pseudomonas putida (strain GB-1) GN=rplR PE=3 SV=1 | |||||||
| RL18_PSEPK |
226 | 12677 | 7 (5) | 5 (4) | 1.38 | ||
| 50S ribosomal protein L18 OS=Pseudomonas putida (strain KT2440) GN=rplR PE=3 SV=1 | |||||||
| RL18_PSEPW |
226 | 12665 | 7 (5) | 5 (4) | 1.38 | ||
| 50S ribosomal protein L18 OS=Pseudomonas putida (strain W619) GN=rplR PE=3 SV=1 | |||||||
7 peptide matches (7 non-duplicate, 0 duplicate)| Query | Dupes | Observed | Mr(expt) | Mr(calc) | ppm | M | Score | Expect | Rank | U | Peptide |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1160 |
1004.5444 | 1003.5371 | 1003.5550 | -17.8 | 0 | 17 | 8.1 | 6Score > 41 indicates identity Score > 38 indicates homology |
K.VLASASTLDK.D | ||
| 1161 |
502.7768 | 1003.5390 | 1003.5550 | -15.9 | 0 | 23 | 0.43 | 1Score > 41 indicates identity Score > 32 indicates homology |
K.VLASASTLDK.D | ||
| 1389 |
560.7926 | 1119.5706 | 1119.5673 | 3.01 | 0 | 61 | 0.00017 | 1Score > 42 indicates identity Score > 36 indicates homology |
U | K.AAGVSQVAFDR.S | |
| 1431 |
567.2758 | 1132.5370 | 1132.5360 | 0.90 | 0 | 75 | 2.4e-005 | 1Score > 41 indicates identity |
U | R.DGATGNIDAATK.V | |
| 1957 |
694.8934 | 1387.7722 | 1387.7671 | 3.73 | 1 | 104 | 1.5e-008 | 1Score > 38 indicates identity |
U | K.VLASASTLDKDLR.D | |
| 2609 |
564.2859 | 1689.8359 | 1689.8322 | 2.17 | 0 | 44 | 0.0006 | 1Score > 41 indicates identity Score > 24 indicates homology |
U | R.SSQHIYAQVISADGSK.V | |
| 2610 |
845.9254 | 1689.8362 | 1689.8322 | 2.40 | 0 | 74 | 7.4e-007 | 1Score > 41 indicates identity Score > 25 indicates homology |
U | R.SSQHIYAQVISADGSK.V |
| Score | Mass | Subset of | |||
|---|---|---|---|---|---|
| RL18_PSE14 |
159 | 12653 | 20.1 | ||
| 50S ribosomal protein L18 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=rplR PE=3 SV=1 | |||||
| 3 samesets of RL18_PSE14 | |||||
| RL18_PSEE4 |
159 | 12651 | |||
| 50S ribosomal protein L18 OS=Pseudomonas entomophila (strain L48) GN=rplR PE=3 SV=1 | |||||
| RL18_PSESM |
159 | 12653 | |||
| 50S ribosomal protein L18 OS=Pseudomonas syringae pv. tomato GN=rplR PE=3 SV=1 | |||||
| RL18_PSEU2 |
159 | 12653 | |||
| 50S ribosomal protein L18 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=rplR PE=3 SV=1 | |||||
| RL18_PSEA7 |
104 | 12711 | 20.1 | ||
| 50S ribosomal protein L18 OS=Pseudomonas aeruginosa (strain PA7) GN=rplR PE=3 SV=1 | |||||
| 4 samesets of RL18_PSEA7 | |||||
| RL18_PSEA8 |
104 | 12711 | |||
| 50S ribosomal protein L18 OS=Pseudomonas aeruginosa (strain LESB58) GN=rplR PE=3 SV=1 | |||||
| RL18_PSEAB |
104 | 12711 | |||
| 50S ribosomal protein L18 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rplR PE=3 SV=1 | |||||
| RL18_PSEAE |
104 | 12711 | |||
| 50S ribosomal protein L18 OS=Pseudomonas aeruginosa GN=rplR PE=3 SV=1 | |||||
| RL18_TERTT |
104 | 12760 | |||
| 50S ribosomal protein L18 OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=rplR PE=3 SV=1 | |||||
| RL18_PSEF5 |
97 | 12692 | 20.1 | ||
| 50S ribosomal protein L18 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rplR PE=3 SV=1 | |||||
| 2 samesets of RL18_PSEF5 | |||||
| RL18_PSEFS |
97 | 12708 | |||
| 50S ribosomal protein L18 OS=Pseudomonas fluorescens (strain SBW25) GN=rplR PE=3 SV=1 | |||||
| RL18_PSEPF |
97 | 12692 | |||
| 50S ribosomal protein L18 OS=Pseudomonas fluorescens (strain Pf0-1) GN=rplR PE=3 SV=1 | |||||
| RL18_PSEMY |
93 | 12636 | 20.1 | ||
| 50S ribosomal protein L18 OS=Pseudomonas mendocina (strain ymp) GN=rplR PE=3 SV=1 | |||||
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