MASCOT Search ResultsMASCOT Search Results| User | : | Jennifer |
|---|---|---|
| : | [email protected] | |
| Search title | : | Rita1 sp |
| MS data file | : | PRT1270_T-BRSC_1_20250714114344.mgf |
| Database | : | SwissProt 57.15 (515,203 sequences; 181,334,896 residues) |
| Timestamp | : | 12 Aug 2025 at 22:50:29 GMT |
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| Type of search | : | MS/MS Ion Search |
|---|---|---|
| Enzyme | : | GluC_Trypsin |
| Fixed modifications | : | Carbamidomethyl (C) |
| Variable modifications | : | Deamidated (NQ), Oxidation (M) |
| Mass values | : | Monoisotopic |
| Protein mass | : | Unrestricted |
| Peptide mass tolerance | : | ± 20 ppm |
| Fragment mass tolerance | : | ± 0.1 Da |
| Max missed cleavages | : | 1 |
| Instrument type | : | ESI-FTICR |
| Number of queries | : | 4,938 |
Peptide score distribution. Ions score is −10log(P), where P is the probability that the observed match is a random event. Individual ions scores > 39 indicate identity or extensive homology (p<0.05).
[Deprecated] Score distribution for family members in the first 50 proteins. Protein scores are derived from ions scores as a non-probabilistic basis for ranking protein families.
| Dupes | Expect | Rank | U | 1 | 2 | Peptide | |
|---|---|---|---|---|---|---|---|
| 0.037 |  2 |
GAYSLSLR | significant | ||||
| 9 | 1 |
GFFLFVEGGR | top ranking | ||||
| 6.4e-005 | 1 |
GSSIFGLAPGK | significant and top ranking | ||||
| 1.3e-006 | 1 |
 |
SSGTSYPDVLK | peptide is found in all proteins in family member 1 | |||
| 6.2e-007 | 1 |
 |
VCNYVSWIK | peptide is found in some but not all proteins in family member 2 | |||
| 6.4e-005 | 1 |
U | GSSIFGLAPGK | unique | |||
| 2 |
5.7e-005 | 1 |
LNTLETEEWFFK | peptide has two duplicates | |||
| 0.18 | 1 |
LNTLETEEWFFK | duplicate peptide |
Right-facing triangle () in the Dupes or Rank column indicates content that can be expanded by clicking on it. Down-facing triangle (
) indicates the content is expanded and can be collapsed. For more details about particular columns, see results format help.
1| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ATPB_PSEPG | 1648 | ATP synthase subunit beta OS=Pseudomonas putida (strain GB-1) GN=atpD PE=3 SV=1 | |
| 2 | ATPB_LEGPA | 425 | ATP synthase subunit beta OS=Legionella pneumophila (strain Paris) GN=atpD PE=3 SV=1 | |
2| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | EFTU2_PSEPK | 1599 | Elongation factor Tu-B OS=Pseudomonas putida (strain KT2440) GN=tufB PE=3 SV=1 | |
| 5 | EFTU_MYCS5 | 42 | Elongation factor Tu OS=Mycoplasma synoviae (strain 53) GN=tuf PE=3 SV=1 | |
| 3 | EFTU_CARRP | 146 | Elongation factor Tu OS=Carsonella ruddii (strain PV) GN=tuf PE=3 SV=1 | |
| 4 | EFTU_ANATD | 54 | Elongation factor Tu OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=tuf PE=3 SV=1 | |
| 2 | EFTU1_PSEPK | 1484 | Elongation factor Tu-A OS=Pseudomonas putida (strain KT2440) GN=tufA PE=3 SV=1 | |
3| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ATPA_PSEPK | 907 | ATP synthase subunit alpha OS=Pseudomonas putida (strain KT2440) GN=atpA PE=3 SV=1 | |
| 3 | ATPA_RICAH | 176 | ATP synthase subunit alpha OS=Rickettsia akari (strain Hartford) GN=atpA PE=3 SV=1 | |
| 2 | ATPA_VEREI | 178 | ATP synthase subunit alpha OS=Verminephrobacter eiseniae (strain EF01-2) GN=atpA PE=3 SV=1 | |
4| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | PORF_PSESY | 690 | Outer membrane porin F OS=Pseudomonas syringae pv. syringae GN=oprF PE=3 SV=1 | |
| 2 | PORF_PSEAE | 143 | Outer membrane porin F OS=Pseudomonas aeruginosa GN=oprF PE=1 SV=1 | |
5| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RPOB_PSEPG | 513 | DNA-directed RNA polymerase subunit beta OS=Pseudomonas putida (strain GB-1) GN=rpoB PE=3 SV=1 | |
| 5 | FTSZ_PSEPK | 129 | Cell division protein ftsZ OS=Pseudomonas putida (strain KT2440) GN=ftsZ PE=3 SV=3 | |
| 2 | RPOC_PSEP1 | 418 | DNA-directed RNA polymerase subunit beta' OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rpoC PE=3 SV=1 | |
| 3 | RPOC_PSEU5 | 335 | DNA-directed RNA polymerase subunit beta' OS=Pseudomonas stutzeri (strain A1501) GN=rpoC PE=3 SV=1 | |
| 6 | RPOC_BIFLD | 91 | DNA-directed RNA polymerase subunit beta' OS=Bifidobacterium longum (strain DJO10A) GN=rpoC PE=3 SV=1 | |
| 4 | RPOC_SYNAS | 202 | DNA-directed RNA polymerase subunit beta' OS=Syntrophus aciditrophicus (strain SB) GN=rpoC PE=3 SV=1 | |
6| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RS5_PSEE4 | 428 | 30S ribosomal protein S5 OS=Pseudomonas entomophila (strain L48) GN=rpsE PE=3 SV=1 |
7| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RL3_PSEP1 | 378 | 50S ribosomal protein L3 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rplC PE=3 SV=1 |
8| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | ARPC_PSEPU | 369 | Antibiotic efflux pump outer membrane protein arpC OS=Pseudomonas putida GN=arpC PE=2 SV=1 |
9| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | RL2_PSEP1 | 329 | 50S ribosomal protein L2 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rplB PE=3 SV=1 |
10| Accession | Score | Description | ||
|---|---|---|---|---|
| 1 | DLDH2_PSEPU | 325 | Dihydrolipoamide dehydrogenase OS=Pseudomonas putida GN=lpdG PE=1 SV=4 | |
| 2 | DLDH_AZOVI | 161 | Dihydrolipoyl dehydrogenase OS=Azotobacter vinelandii PE=1 SV=1 | |
22 peptide matches (21 non-duplicate, 1 duplicate)| Query | Dupes | Observed | Mr(expt) | Mr(calc) | ppm | M | Score | Expect | Rank | U | 1 | 2 | Peptide |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Query | Dupes | Observed | Mr(expt) | Mr(calc) | ppm | M | Score | Expect | Rank | U | 1 | 2 | Peptide |
| 212 |
487.3255 | 486.3182 | 486.3166 | 3.39 | 0 | 28 | 0.22 | 1Score > 46 indicates identity Score > 34 indicates homology |
|
K.AGIVK.N | |||
| 219 |
501.3408 | 500.3335 | 500.3322 | 2.62 | 0 | 30 | 0.3 | 1Score > 42 indicates identity Score > 38 indicates homology |
|
|
K.LLAGK.K | ||
| 333 |
312.1740 | 622.3334 | 622.3326 | 1.32 | 0 | 20 | 0.46 | 1Score > 41 indicates identity Score > 30 indicates homology |
|
K.ITFDK.L | |||
| 414 |
673.4001 | 672.3928 | 672.3806 | 18.1 | 0 | 28 | 0.91 | 7Score > 43 indicates identity Score > 40 indicates homology |
U | |
K.QGLDIK.L | ||
| 467 |
350.7220 | 699.4294 | 699.4279 | 2.21 | 0 | 24 | 0.88 | 1Score > 41 indicates identity Score > 36 indicates homology |
U | |
K.AAQLGLK.T | ||
| 468 |
700.4371 | 699.4298 | 699.4279 | 2.75 | 0 | 45 | 0.027 | 1Score > 41 indicates identity |
U | |
K.AAQLGLK.T | ||
| 524 |
727.4844 | 726.4771 | 726.4752 | 2.64 | 0 | 31 | 0.17 | 1Score > 36 indicates identity |
U | |
|
K.LIVAVGR.R | |
| 525 |
364.2462 | 726.4778 | 726.4752 | 3.64 | 0 | 25 | 0.17 | 1Score > 36 indicates identity Score > 30 indicates homology |
U | |
|
K.LIVAVGR.R | |
| 949 |
460.2493 | 918.4840 | 918.4811 | 3.25 | 0 | 35 | 0.11 | 1Score > 42 indicates identity Score > 38 indicates homology |
U | |
K.ALLDSSWK.Y | ||
| 1393 |
1120.6439 | 1119.6366 | 1119.6288 | 6.97 | 0 | 88 | 5.7e-007 | 1Score > 38 indicates identity |
U | |
K.NLTGGVATLFK.A | ||
| 1394 |
560.8265 | 1119.6384 | 1119.6288 | 8.60 | 0 | 47 | 0.00055 | 1Score > 37 indicates identity Score > 27 indicates homology |
U | |
K.NLTGGVATLFK.A | ||
| 1402 |
1 |
561.3199 | 1120.6252 | 1120.6128 | 11.1 | 0 | 24 | 1.5 | 2Score > 38 indicates identity Score > 38 indicates homology |
U | |
K.NLTGGVATLFK.A + Deamidated (NQ) | |
| 1403 |
561.3215 | 1120.6284 | 1120.6128 | 13.9 | 0 | (23) | 1.5 | 2Score > 38 indicates identity Score > 37 indicates homology |
U | |
K.NLTGGVATLFK.A + Deamidated (NQ) | ||
| 1515 |
390.2065 | 1167.5977 | 1167.5996 | -1.69 | 0 | 18 | 0.16 | 1Score > 40 indicates identity Score > 22 indicates homology |
U | |
K.ANGVTSIQGHGK.L | ||
| 1516 |
584.8085 | 1167.6024 | 1167.5996 | 2.40 | 0 | 67 | 9.6e-006 | 1Score > 40 indicates identity Score > 29 indicates homology |
U | |
K.ANGVTSIQGHGK.L | ||
| 1549 |
591.2859 | 1180.5572 | 1180.5547 | 2.19 | 0 | 43 | 0.0048 | 1Score > 41 indicates identity Score > 32 indicates homology |
U | |
R.AMAANDTGGFVK.V | ||
| 2707 |
866.9929 | 1731.9712 | 1731.9560 | 8.82 | 0 | 38 | 0.0029 | 1Score > 35 indicates identity Score > 25 indicates homology |
U | |
K.FDVVVIGAGPGGYVAAIK.A | ||
| 2962 |
934.0498 | 1866.0850 | 1866.0727 | 6.60 | 1 | 81 | 4.4e-007 | 1Score > 30 indicates identity |
U | |
|
LGVIGAGVIGLELGSVWAR.L | |
| 2963 |
623.0397 | 1866.0973 | 1866.0727 | 13.2 | 1 | 59 | 5.5e-006 | 1Score > 29 indicates identity Score > 19 indicates homology |
U | |
|
LGVIGAGVIGLELGSVWAR.L | |
| 3320 |
697.4011 | 2089.1815 | 2089.1572 | 11.6 | 1 | 65 | 1.1e-006 | 1Score > 32 indicates identity Score > 18 indicates homology |
U | |
M.SQKFDVIVIGAGPGGYVAAIK.S | ||
| 3320 |
697.4011 | 2089.1815 | 2089.1572 | 11.6 | 1 | 63 | 1.6e-006 | 2Score > 32 indicates identity Score > 18 indicates homology |
U | |
M.TQKFDVVVIGAGPGGYVAAIK.A | ||
| 4039 |
882.4583 | 2644.3531 | 2644.3359 | 6.49 | 1 | 47 | 0.00016 | 1Score > 37 indicates identity Score > 22 indicates homology |
U | |
K.AQMNYDLIPSVIYTHPEIAWVGK.T |
| Score | Mass | Subset of | |||
|---|---|---|---|---|---|
| DLDH2_PSEAE |
148 | 50362 | 10.1 | ||
| Dihydrolipoamide dehydrogenase OS=Pseudomonas aeruginosa GN=lpdG PE=3 SV=1 | |||||
| 1 sameset of DLDH2_PSEAE | |||||
| DLDH_PSEFL |
148 | 50348 | |||
| Dihydrolipoyl dehydrogenase OS=Pseudomonas fluorescens GN=lpd PE=1 SV=3 | |||||
| DLDH2_ARATH |
45 | 54237 | 10.1 | ||
| Dihydrolipoyl dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=LPD2 PE=1 SV=1 | |||||
| 3 samesets of DLDH2_ARATH | |||||
| DLDH_SOLTU |
45 | 3910 | |||
| Dihydrolipoyl dehydrogenase (Fragment) OS=Solanum tuberosum PE=1 SV=1 | |||||
| DLDH_TRYBB |
45 | 50815 | |||
| Dihydrolipoyl dehydrogenase OS=Trypanosoma brucei brucei PE=3 SV=1 | |||||
| DLDH2_BACSU |
45 | 50632 | |||
| Dihydrolipoyl dehydrogenase OS=Bacillus subtilis GN=bfmBC PE=3 SV=1 | |||||
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