MASCOT Search Results

Search metadata
User : Jennifer
E-mail : [email protected]
Search title : 1
MS data file : PRT1249__1.mgf
Database : Ecoli-MetEng 20200720 (4,898 sequences; 1,660,463 residues)
Timestamp : 23 Jun 2025 at 17:44:49 GMT
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Search parameters
Type of search : MS/MS Ion Search
Enzyme : Trypsin
Fixed modifications : Carbamidomethyl (C)
Variable modifications : Deamidated (NQ), Oxidation (M)
Mass values : Monoisotopic
Protein mass : Unrestricted
Peptide mass tolerance : ± 20 ppm
Fragment mass tolerance : ± 0.1 Da
Max missed cleavages : 1
Instrument type : ESI-FTICR
Number of queries : 4,592

Score distribution

Peptide score distribution

Peptide score distribution. Ions score is −10log(P), where P is the probability that the observed match is a random event. Individual ions scores > 17 indicate identity or extensive homology (p<0.05).

Protein score distribution for the first 50 proteins

[Deprecated] Score distribution for family members in the first 50 proteins. Protein scores are derived from ions scores as a non-probabilistic basis for ranking protein families.

Legend
Dupes Expect Rank U 1 2 Peptide
0.037 +2 GAYSLSLR significant
9 +1 GFFLFVEGGR top ranking
6.4e-005 +1 GSSIFGLAPGK significant and top ranking
1.3e-006 +1 X SSGTSYPDVLK peptide is found in all proteins in family member 1
6.2e-007 +1 / VCNYVSWIK peptide is found in some but not all proteins in family member 2
6.4e-005 +1 U GSSIFGLAPGK unique
+2 5.7e-005 +1 LNTLETEEWFFK peptide has two duplicates
0.18 +1 LNTLETEEWFFK duplicate peptide

Right-facing triangle (+) in the Dupes or Rank column indicates content that can be expanded by clicking on it. Down-facing triangle (-) indicates the content is expanded and can be collapsed. For more details about particular columns, see results format help.

Protein Family Summary

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Protein families 1–10 (out of 35)


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+1

Accession Score Description
1 Q9EX54_STRCO 4154 Putative type I polyketide synthase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) OX=100226 GN=SCO6273 PE=4 SV=1

+2

Accession Score Description
Family member distances as a dendrogram 1 K2C1_HUMAN 196 Keratin, type II cytoskeletal 1 OS=Homo sapiens GN=KRT1 PE=1 SV=6
2 K22E_HUMAN 114 Keratin, type II cytoskeletal 2 epidermal OS=Homo sapiens GN=KRT2 PE=1 SV=2

+3

Accession Score Description
1 TRYP_PIG 188 Trypsin OS=Sus scrofa PE=1 SV=1

-4

Accession Score Description
1 EFTU1_ECOLI 168 Elongation factor Tu 1 OS=Escherichia coli (strain K12) GN=tufA PE=1 SV=1
Score Mass Matches Sequences emPAI
4.1 EFTU1_ECOLI 168 43427 9 (6) 2 (1) 0.16
Elongation factor Tu 1 OS=Escherichia coli (strain K12) GN=tufA PE=1 SV=1
1 sameset of EFTU1_ECOLI
EFTU2_ECOLI 168 43457 9 (6) 2 (1) 0.16
Elongation factor Tu 2 OS=Escherichia coli (strain K12) GN=tufB PE=1 SV=1

-9 peptide matches (3 non-duplicate, 6 duplicate)

Query Dupes Observed Mr(expt) Mr(calc) ppm  M Score Expect Rank U Peptide
3801   445.9872 1779.9197 1779.9375 -10.0 0 6 0.73 +1Score > 18 indicates identity U K.MVVTLIHPIAMDDGLR.F
4401 -5 910.7898 2729.3476 2729.3186 10.6 0 76 1.2e-007 +1Score > 19 indicates identity U K.NMITGAAQMDGAILVVAATDGPMPQTR.E + Deamidated (NQ)
4402   910.7903 2729.3491 2729.3186 11.1 0 (45) 0.00015 +1Score > 19 indicates identity U K.NMITGAAQMDGAILVVAATDGPMPQTR.E + Deamidated (NQ)
4403   910.7904 2729.3494 2729.3186 11.3 0 (20) 0.049 +1Score > 19 indicates identity U K.NMITGAAQMDGAILVVAATDGPMPQTR.E + Deamidated (NQ)
4404   910.7906 2729.3500 2729.3186 11.5 0 (44) 0.00021 +1Score > 19 indicates identity U K.NMITGAAQMDGAILVVAATDGPMPQTR.E + Deamidated (NQ)
4405   910.7918 2729.3536 2729.3186 12.8 0 (7) 0.87 +1Score > 19 indicates identity U K.NMITGAAQMDGAILVVAATDGPMPQTR.E + Deamidated (NQ)
4406   910.7929 2729.3569 2729.3186 14.0 0 (6) 1.1 +1Score > 19 indicates identity U K.NMITGAAQMDGAILVVAATDGPMPQTR.E + Deamidated (NQ)
4407 +1 916.1223 2745.3451 2745.3136 11.5 0 45 0.00014 +1Score > 19 indicates identity U K.NMITGAAQMDGAILVVAATDGPMPQTR.E + Deamidated (NQ); Oxidation (M)

+5

Accession Score Description
Family member distances as a dendrogram 1 K1C10_HUMAN 145 Keratin, type I cytoskeletal 10 OS=Homo sapiens GN=KRT10 PE=1 SV=6
2 K1C9_HUMAN 101 Keratin, type I cytoskeletal 9 OS=Homo sapiens GN=KRT9 PE=1 SV=3

+6

Accession Score Description
1 RS1_ECOLI 97 30S ribosomal protein S1 OS=Escherichia coli (strain K12) GN=rpsA PE=1 SV=1

+7

Accession Score Description
1 RL4_ECOLI 65 50S ribosomal protein L4 OS=Escherichia coli (strain K12) GN=rplD PE=1 SV=1

+8

Accession Score Description
1 ISPA_ECOLI 58 Farnesyl diphosphate synthase OS=Escherichia coli (strain K12) GN=ispA PE=1 SV=1

+9

Accession Score Description
1 GLPB_ECOLI 44 Anaerobic glycerol-3-phosphate dehydrogenase subunit B OS=Escherichia coli (strain K12) GN=glpB PE=1 SV=1

+10

Accession Score Description
1 RL7_ECOLI 42 50S ribosomal protein L7/L12 OS=Escherichia coli (strain K12) GN=rplL PE=1 SV=2
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